PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028722.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 123aa    MW: 13758.1 Da    PI: 10.8562
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028722.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.8e-1611981094
                 HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3 10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                 + +s+ l++p +++++     g      ++ +  desg +W++++++rkk++    vl+kGW+ Fv+ ++Lk+gD + F+l+++  ++++ 
  CCG028722.1 11 TDTSKTLSVPTNYLKSLpsfkG---GHAVEFQAIDESGFVWTFQCSIRKKGQYpkPVLSKGWRAFVRNKKLKVGDKIKFSLNQTAAATPFY 98
                 4456679*******99997643...35678999************9999999899*************************99887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.7982103IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-14391IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.8E-17392IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-74103IPR003340B3 DNA binding domain
CDDcd100172.18E-18491No hitNo description
PfamPF023622.7E-131299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MTTFSKILGK TDTSKTLSVP TNYLKSLPSF KGGHAVEFQA IDESGFVWTF QCSIRKKGQY  60
PKPVLSKGWR AFVRNKKLKV GDKIKFSLNQ TAAATPFYRV QAQKEVKIFG AIFGYSPIIA  120
TFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15478RKKGQYPKPVLSKGWRAFVRNKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010223.18e-86PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DW613e-81U7DW61_POPTR; Uncharacterized protein
STRINGPOPTR_0219s00200.16e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43950.15e-08auxin response factor 23