PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028723.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 124aa    MW: 14044.5 Da    PI: 10.7305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028723.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.6e-1413901187
                 HHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3 11 lksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                   ++rl+lp k++++    +     +++    desg +W++k++ rkk+    vl+kGW  Fv+ ++Lk+gD v F  +++
  CCG028723.1 13 I-QKRLSLPTKCFKSLpslK--GSHGRDFPAIDESGFVWTFKCSTRKKGHPkPVLSKGWLAFVRHKELKVGDRVKFLKEKD 90
                 3.346********9999554..4467789999***********765554447************************85544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.5432105IPR003340B3 DNA binding domain
SMARTSM010190.00364102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-174106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-14595IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-16592No hitNo description
PfamPF023622.0E-101290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAEVTKLLTK TDIQKRLSLP TKCFKSLPSL KGSHGRDFPA IDESGFVWTF KCSTRKKGHP  60
KPVLSKGWLA FVRHKELKVG DRVKFLKEKD RSGPATPFYR VEAEKEIKIF GAIFGYSLIV  120
SSFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010224.19e-86PREDICTED: uncharacterized protein LOC105115124
TrEMBLB9I5A08e-76B9I5A0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02040.11e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778