PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028751.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 1072aa MW: 118989 Da PI: 8.1462

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028751.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128	3.7e-40	144	221	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+++l++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ CCG028751.1 144 TCQVDNCKENLTTAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 221 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.2E-33	139	206	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.547	142	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.24E-36	143	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-29	145	218	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1072 aa Download sequence Send to blast
MEKVGAQVAA PMFIHQALSS RYCDLASMAK KRDLSYQMPN FQLQQHHFLE TSLEKNWNSK 60 AWDWDSVGFV ARPSDAAETS RLGTASRETK KKDESDYKIK SNSVNEDVGL GLNLGGSLTS 120 VEEPVLRPNK RVRSGSPANG SYPTCQVDNC KENLTTAKDY HRRHKVCEVH SKATKALVGK 180 QMQRFCQQCS RFHPLTEFDE GKRSCRRRLA GHNRRRRKTQ PEDVTSRLLV PGNQDINSNG 240 NLDIVNLLTA LARSQGRTDD KSTTCTTVPD KDQLIQILSK INSLPLPVDL AAKLANMATL 300 NGKNPDQPSS AHQNRLHGTA SSSSTMDLLA VLSATLAASA PDALAILSQR SSQSSDSDKS 360 KLMGPNQVTG SDLQKRSNVE FPSVGGERVS YCYESPVEDS DCHIQESRPD FPLQLFSSSP 420 ENDSPPKLAS SRKYFSSDSS NPVEDRSPSS SPPVVQKLFP LQSTAETMKY EKMPISRDVN 480 ANVEGSRSHA CVLPLELFRG SNREPDRGSF QSFPYQGGYT SSSGSDHSPS RQNSDSQDRT 540 GRLIFKLFDK DPSHFPGTLR TQIYNWLSNS PSEMESYIRP GCVVLSIYLS MSSAAWEQLE 600 RNLLQLVDSL VQDSDSDLWK SGRFLLNTGR QLASHKDGKI RLCKSWRTWS SPELISVSPV 660 AVVGGQETSL QLKGRNLTSP GTKIHCMHMG GYTLKEIMGS TSPGSIYDEI NVGGFKIHGP 720 SPNILGRCFI EVENGFKVNS FPVIIADASI CKELRLLESE FDEKAKVGDI VSEEQAHDLW 780 RPRSREEVLH FLNELGWLFQ RKRESSILEV PDFSLSRFKF LLIFSVERDY CVLVKTILDM 840 LVERNTCRDE LSKESLEMLS EVQLLNRAVK RSCRKMVDLL IHYSIVSHDN SSRTYIFPPN 900 VRGPGGITPL HLVACASGSD GLVDALTNDP HEIGLSCWNS LLDVNGQSPY AYALMTKNHS 960 YNLLVARTLA NKINAQVSVT IGNEIEQPAV EQEHRAISQF QQGRKSCAKC AIVAAKVHKR 1020 VPGSQGLLQR PYVHSMLAIA AVCVCVCLFF RGAPDIGLVS PFKWENLDFG TI

Sequence ? help Back to Top

Protein Sequence Length: 1072 aa Download sequence Send to blast

MEKVGAQVAA PMFIHQALSS RYCDLASMAK KRDLSYQMPN FQLQQHHFLE TSLEKNWNSK  60
AWDWDSVGFV ARPSDAAETS RLGTASRETK KKDESDYKIK SNSVNEDVGL GLNLGGSLTS  120
VEEPVLRPNK RVRSGSPANG SYPTCQVDNC KENLTTAKDY HRRHKVCEVH SKATKALVGK  180
QMQRFCQQCS RFHPLTEFDE GKRSCRRRLA GHNRRRRKTQ PEDVTSRLLV PGNQDINSNG  240
NLDIVNLLTA LARSQGRTDD KSTTCTTVPD KDQLIQILSK INSLPLPVDL AAKLANMATL  300
NGKNPDQPSS AHQNRLHGTA SSSSTMDLLA VLSATLAASA PDALAILSQR SSQSSDSDKS  360
KLMGPNQVTG SDLQKRSNVE FPSVGGERVS YCYESPVEDS DCHIQESRPD FPLQLFSSSP  420
ENDSPPKLAS SRKYFSSDSS NPVEDRSPSS SPPVVQKLFP LQSTAETMKY EKMPISRDVN  480
ANVEGSRSHA CVLPLELFRG SNREPDRGSF QSFPYQGGYT SSSGSDHSPS RQNSDSQDRT  540
GRLIFKLFDK DPSHFPGTLR TQIYNWLSNS PSEMESYIRP GCVVLSIYLS MSSAAWEQLE  600
RNLLQLVDSL VQDSDSDLWK SGRFLLNTGR QLASHKDGKI RLCKSWRTWS SPELISVSPV  660
AVVGGQETSL QLKGRNLTSP GTKIHCMHMG GYTLKEIMGS TSPGSIYDEI NVGGFKIHGP  720
SPNILGRCFI EVENGFKVNS FPVIIADASI CKELRLLESE FDEKAKVGDI VSEEQAHDLW  780
RPRSREEVLH FLNELGWLFQ RKRESSILEV PDFSLSRFKF LLIFSVERDY CVLVKTILDM  840
LVERNTCRDE LSKESLEMLS EVQLLNRAVK RSCRKMVDLL IHYSIVSHDN SSRTYIFPPN  900
VRGPGGITPL HLVACASGSD GLVDALTNDP HEIGLSCWNS LLDVNGQSPY AYALMTKNHS  960
YNLLVARTLA NKINAQVSVT IGNEIEQPAV EQEHRAISQF QQGRKSCAKC AIVAAKVHKR  1020
VPGSQGLLQR PYVHSMLAIA AVCVCVCLFF RGAPDIGLVS PFKWENLDFG TI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	135	218	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041129.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Refseq	XP_011041130.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2K2AMS4	0.0	A0A2K2AMS4_POPTR; Uncharacterized protein
STRING	POPTR_0005s28010.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]