PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029013.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 180aa    MW: 19612.9 Da    PI: 5.2723
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029013.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-191565155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a++ ++g
  CCG029013.1 15 SSYTGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 65
                 679****999.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.64E-211574No hitNo description
SuperFamilySSF541715.3E-221574IPR016177DNA-binding domain
PfamPF008476.1E-121565IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-311674IPR001471AP2/ERF domain
SMARTSM003805.6E-341679IPR001471AP2/ERF domain
PROSITE profilePS5103222.6161673IPR001471AP2/ERF domain
PRINTSPR003673.8E-91728IPR001471AP2/ERF domain
PRINTSPR003673.8E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEGRNSTANH GGIASSYTGV RKRKWGKWVS EIREPGKKTR IWLGSFETPE MAAAAYDVAA  60
LHFRGCEAKL NFPDRAGKLP MPASSSADHI RMAAHQAAIS LRPSTADSSQ GGSSSSNVGP  120
ITVRLSASQI QAINESPLDS PKMWMQMAEI ATLEESSMMF SDDIEDDEWD NNQTDPLWGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-171775665ATERF1
3gcc_A8e-171775665ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007591.11e-131PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I24e-61ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLB9GFN91e-108B9GFN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18180.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-60ERF family protein