PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029022.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 371aa MW: 40277.1 Da PI: 8.0462

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029022.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.9	4.9e-13	110	154	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar + Rt+ q+ s+ qk+ CCG029022.1 110 PWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKF 154 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.306	103	159	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-16	105	160	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-18	106	158	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.2E-11	107	150	IPR009057	Homeodomain-like
SMART	SM00717	8.2E-10	107	157	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-10	110	153	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-8	110	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009739	Biological Process	response to gibberellin
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MTRRCSHCSN NGHNSRTCPT RSSLASSSSA PLSGVKLFGV RLTDGSIIKK SASMGNLSAH 60 YHSSSSAAAS PNPDSPVSDR IHDDGYLSDD PATHASCSTS RRGDRKKGVP WTEEEHRLFL 120 IGLQKLGKGD WRGIARNFVV SRTPTQVASH AQKFFIRQSN ATRRKRRSSL FDMVPEMATD 180 PQPVPEEQEL PSSQAGDADN VDALPSLNLS LKPEFEPMDT ESQEPVKERD KTVMGFSEFK 240 PAVPSSSEFV PIVSGSNEFT AVPGFFPAYM PVPYPYWAPN TTPFEEGKGA ATSRHEVLKP 300 VPSILKEPFN VDELVGMSHL SLGEIERRHR EPSPLSLKLI GEAPRQSAFH ASAPASGSNL 360 SNGKASPIQA V

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MTRRCSHCSN NGHNSRTCPT RSSLASSSSA PLSGVKLFGV RLTDGSIIKK SASMGNLSAH  60
YHSSSSAAAS PNPDSPVSDR IHDDGYLSDD PATHASCSTS RRGDRKKGVP WTEEEHRLFL  120
IGLQKLGKGD WRGIARNFVV SRTPTQVASH AQKFFIRQSN ATRRKRRSSL FDMVPEMATD  180
PQPVPEEQEL PSSQAGDADN VDALPSLNLS LKPEFEPMDT ESQEPVKERD KTVMGFSEFK  240
PAVPSSSEFV PIVSGSNEFT AVPGFFPAYM PVPYPYWAPN TTPFEEGKGA ATSRHEVLKP  300
VPSILKEPFN VDELVGMSHL SLGEIERRHR EPSPLSLKLI GEAPRQSAFH ASAPASGSNL  360
SNGKASPIQA V

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148241	0.0	EF148241.1 Populus trichocarpa x Populus deltoides clone WS01312_B18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010432.1	0.0	PREDICTED: uncharacterized protein LOC105115293 isoform X1
Swissprot	Q7XC57	3e-96	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A2K2C038	0.0	A0A2K2C038_POPTR; Uncharacterized protein
STRING	XP_002515966.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7719	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16350.1	1e-103	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]