PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029234.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 1073aa MW: 118858 Da PI: 8.256

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029234.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ CCG029234.1 145 TCQVDNCKEDLTKAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 222 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.9E-34	140	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.906	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.45E-37	144	224	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-29	146	219	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence Send to blast
MEEVGAQVAA PIFIHQALST RYCDMTSMAK KHELSYQSPN SQLQQHQFLQ TSREKNWNSK 60 AWDWDSVGFV AKPSVAAETL RLGTVSRELK KKDKSDSKNK SNSVSEDDDG LGLNLGGSLT 120 SVEEPASRPS KRVRSGSPGN GSYPTCQVDN CKEDLTKAKD YHRRHKVCEV HSKATKALVG 180 KQMQRFCQQC SRFHPLTEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLL LPGNRDMNNN 240 GNLDIVNLLT ALARSQGGND DKSTNCPTVP DKDQLIQILN KINSLPLPMD LAAKLSNIAS 300 LNVKNPNQPS LGHQNRLNGT ASSPSTNDLL AVLSTTLTAS APDALAILSQ RSSQSSDSDK 360 SKLPGPNQVT VPHLQKRSNF DFPAVGVERI SHCYESPAED SDYQIQESRP NLPLQLFSSS 420 PENESRQKPA SPGKYFSSDS SNPIEERSPS SSPPVVQKLF PLQSTAETMK SEKMSVSREV 480 NANVGGGRSH GSVLPLELFR GPNREPDHSS FQSFPYQGGY TSSSGSDHSP SSQNSDPQDR 540 TGRIIFKLFD KDPSHFPGTL RTKIYNWLSN SPSDMESYIR PGCVVLSVYL SMPSASWEQL 600 ERNLLQLVDS LVQDSDSDLW KSGRFLLNTG RQLASHKDGK VRLCKSWRTW SSPELILVSP 660 VAVISGQETS LQLKGRNLTG LGTKIHCTYM GGYTSKEVTD SSSPGSMYDE INVGGFKIHG 720 PSPSILGRCF IEVENGFKGN SFPVIIADAS ICKELRLLES EFDEKVLVSN IVSEEQARDF 780 GRPRSREEVM HFLNELGWLF QRKSMPSMHE VPDYSVNRFK FLLIFSVERD YCVLVKTILD 840 MLVERNTCRD ELSKEHLEML HEIQLLNRSV KRRCRKMADL LIHYYIISGD NSSRTYIFPP 900 NVGGPGGITP LHLAACASGS DGLVDALTND PHEIGLSCWN SVLDANGLSP YAYAVMTKNH 960 SHNLLVARKL AGKRNGQISV AIGNEIEQAA LEQEPMTISH FQHERKSCAK CASVAAEIHG 1020 RFLGSQGLLQ RPYIHSMLAI AAVCVCVCLF FRGAPDIGLV APFKWENLNY GTI

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence Send to blast

MEEVGAQVAA PIFIHQALST RYCDMTSMAK KHELSYQSPN SQLQQHQFLQ TSREKNWNSK  60
AWDWDSVGFV AKPSVAAETL RLGTVSRELK KKDKSDSKNK SNSVSEDDDG LGLNLGGSLT  120
SVEEPASRPS KRVRSGSPGN GSYPTCQVDN CKEDLTKAKD YHRRHKVCEV HSKATKALVG  180
KQMQRFCQQC SRFHPLTEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLL LPGNRDMNNN  240
GNLDIVNLLT ALARSQGGND DKSTNCPTVP DKDQLIQILN KINSLPLPMD LAAKLSNIAS  300
LNVKNPNQPS LGHQNRLNGT ASSPSTNDLL AVLSTTLTAS APDALAILSQ RSSQSSDSDK  360
SKLPGPNQVT VPHLQKRSNF DFPAVGVERI SHCYESPAED SDYQIQESRP NLPLQLFSSS  420
PENESRQKPA SPGKYFSSDS SNPIEERSPS SSPPVVQKLF PLQSTAETMK SEKMSVSREV  480
NANVGGGRSH GSVLPLELFR GPNREPDHSS FQSFPYQGGY TSSSGSDHSP SSQNSDPQDR  540
TGRIIFKLFD KDPSHFPGTL RTKIYNWLSN SPSDMESYIR PGCVVLSVYL SMPSASWEQL  600
ERNLLQLVDS LVQDSDSDLW KSGRFLLNTG RQLASHKDGK VRLCKSWRTW SSPELILVSP  660
VAVISGQETS LQLKGRNLTG LGTKIHCTYM GGYTSKEVTD SSSPGSMYDE INVGGFKIHG  720
PSPSILGRCF IEVENGFKGN SFPVIIADAS ICKELRLLES EFDEKVLVSN IVSEEQARDF  780
GRPRSREEVM HFLNELGWLF QRKSMPSMHE VPDYSVNRFK FLLIFSVERD YCVLVKTILD  840
MLVERNTCRD ELSKEHLEML HEIQLLNRSV KRRCRKMADL LIHYYIISGD NSSRTYIFPP  900
NVGGPGGITP LHLAACASGS DGLVDALTND PHEIGLSCWN SVLDANGLSP YAYAVMTKNH  960
SHNLLVARKL AGKRNGQISV AIGNEIEQAA LEQEPMTISH FQHERKSCAK CASVAAEIHG  1020
RFLGSQGLLQ RPYIHSMLAI AAVCVCVCLF FRGAPDIGLV APFKWENLNY GTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	136	219	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	Transfer from Potri.002G002400	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034771.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2K2BB79	0.0	A0A2K2BB79_POPTR; Uncharacterized protein
STRING	POPTR_0002s00440.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9694	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]