PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029259.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 418aa    MW: 47019.5 Da    PI: 5.4794
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029259.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.4e-08361416147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r++WT++E++ l+++v+++  +      W++I ++       +Rt+ ++k++w++ 
      CCG029259.1 361 RLNWTADEEDTLKEGVEKFAIPgnkntPWRKILEYGHrvfdSTRTPTDLKDKWRNM 416
                      89*****************999999*********999*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.104.0E-6361IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.51E-7358IPR011011Zinc finger, FYVE/PHD-type
SMARTSM002490.0055552IPR001965Zinc finger, PHD-type
PROSITE profilePS5129411.653356418IPR017930Myb domain
SuperFamilySSF466892.81E-9360417IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-9361418IPR009057Homeodomain-like
PfamPF002494.1E-6361416IPR001005SANT/Myb domain
CDDcd116601.23E-13364418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEVDACLSCN KRGKSKLLVC CVIGCPVSIH EKCANFKLAF DDSGRFCCPY CSYKREVGRA  60
KELFRKAMLA KKALLGFIDP EMVGGEAMGG KEKRNGGERA EFDGAENRDS LVEDGGDGLK  120
VSDCDRCEVM VDDEMDGALP GAVNGSDNGH KSQEEKIPGI ESLEDSISNE IRDERNISET  180
HEFETLEGEE GKQEREKDGR ILEGGERAES SKDHYVEKEK KQMQQDGCED EEQKEQEQKH  240
QNGCDNKEQG QCVGEEQVHH DAREANSGGG VAAPKVPHVS DSDTGKSVVL RRRVKHIGKK  300
KIAESLDAKL SKEAPPQPHT IDENEAKIQK EKVILYKEPR QRLESPKISS NLYPRNEKRQ  360
RLNWTADEED TLKEGVEKFA IPGNKNTPWR KILEYGHRVF DSTRTPTDLK DKWRNMTK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2323603e-96CU232360.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034802.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034803.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
RefseqXP_011034805.10.0PREDICTED: protein CHROMATIN REMODELING 4-like isoform X1
TrEMBLA0A3N7EG690.0A0A3N7EG69_POPTR; Uncharacterized protein
STRINGPOPTR_0002s00710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-06MYB_related family protein