PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029287.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 215aa MW: 24549.7 Da PI: 5.3885

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029287.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	76	136	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ qle+Le+ F++ n +p ++++++++++l +++e++V++WFqNrRa+ k+ CCG029287.1 76 RQRWTPKPAQLEILEQIFKQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 136 89***************99************************************97 PP
2	Wus_type_Homeobox	95.6	4.2e-31	75	138	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++k+ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq CCG029287.1 75 SRQRWTPKPAQLEILEQIFKQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 138 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-17	71	140	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-17	71	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.673	72	137	IPR001356	Homeobox domain
SMART	SM00389	4.4E-13	74	141	IPR001356	Homeobox domain
CDD	cd00086	7.92E-14	76	138	No hit	No description
Pfam	PF00046	2.7E-18	76	136	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEEGRFQNCG GLGVKVMTDE QMEMLRKQIS VYATICEQLV EMHKALSAQQ DFAGMGLGNP 60 YCDPLLSSAV HKIGSRQRWT PKPAQLEILE QIFKQCNATP GRQKIKDITR ELAQHGQISE 120 TNVYNWFQNR RARSKRKQSA VVPNNGESEM ETDVESFKEK KTRAEDSQPD ENTTPMADHM 180 YFNSPDIGFD QLMGKIESPG SCIPYWQMEQ YDLFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010810	0.0	AJ010810.1 Populus tremula X Populus tremuloides mRNA for homeodomain protein HB1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034864.1	1e-164	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	4e-70	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	B9GQ01	1e-158	B9GQ01_POPTR; WOX family protein
STRING	POPTR_0002s00980.1	1e-159	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-66	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]