PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029490.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 224aa MW: 24279.6 Da PI: 8.8766

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029490.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.1	3.9e-40	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA+ r+rdPvyG++g i++lqqq++ l+ael++++ CCG029490.1 42 PCAACKLLRRRCAEECPFSPYFSPLEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANLRLRDPVYGSMGAISALQQQIQLLQAELSATR 139 7**********************************************************************************************998 PP DUF260 99 ee 100 + CCG029490.1 140 AD 141 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-40	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSRDRERFEE IGKRIKRESD ASSLMRRRQM LGPPGILNTV TPCAACKLLR RRCAEECPFS 60 PYFSPLEPQK FAAVHKVFGA SNVSKLLMEV PESQRADAAN SLVYEANLRL RDPVYGSMGA 120 ISALQQQIQL LQAELSATRA DILNYKYREA AASNIISSTH AALVSSATAS ISAPSQTLAP 180 PPPTPPPLSV VVSLSTSSPS LYTPPTSTSG YSTISSDNNV PYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-43	42	149	11	118	LOB family transfactor Ramosa2.1
5ly0_B	8e-43	42	149	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB970780	0.0	AB970780.1 Populus tremula x Populus tremuloides PtxtLBD15a mRNA for LOB domain-containing protein 15, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041813.1	1e-162	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	4e-79	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	U5FGN9	1e-129	U5FGN9_POPTR; Uncharacterized protein
STRING	POPTR_0019s14790.1	1e-130	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-75	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]