PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029619.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 521aa    MW: 56831.9 Da    PI: 7.6666
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029619.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.55.6e-24193236144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  CCG029619.1 193 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 236
                  79***************************************986 PP
2QLQ57.83.2e-20133168237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   FTaaQ+q+L++Q ++yKy++a++PvPpeLl +i+k
  CCG029619.1 133 LFTAAQWQELERQTTIYKYMMASVPVPPELLIPITK 168
                  5********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.8E-12132168IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.117133168IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.8E-15134166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.402193237IPR014977WRC domain
PfamPF088791.6E-19194236IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MRSSWSRTSS GFRDDVGLGL RMQDNLESCS GSGKRSVTAM SCDHEPAAHE LSSSSCRGGG  60
GGSGPLFYST SNDVTCLGDI NDVVASVSAS GTGTPDAIAE SKSLQYPYFT SDSSLFTFNS  120
SVEMTPSVNE KVLFTAAQWQ ELERQTTIYK YMMASVPVPP ELLIPITKNQ SNVLPPQSNS  180
SLELGIPSLN SSDPEPWRCK RTDGKKWRCS RDVAPDQKYC ERHSHKSRPR SRKPVELHAH  240
DSPRTLTNNN TNTNITNNNY STNPHLFNQK PYFPSHLFMF SSAMASSASS YDQPRSLEWL  300
LKGEILPVAS NYSQEWQHLK RDSIKGNCKV YNFYREEQPL CSNTHRGGYS LQAQRLNDYC  360
SVLSSPTSTT SERALSPSLT QEQETRHFID AWSTNSGRDD IGGIGKKSYV SSSEKLVLPH  420
SALTLSMSSG TGSETNNEGN GCAQLSSFGI MGSSDRDHQR ASGLRPHWMM SHGGSWMVSP  480
PGGPLAEALC LGISSNAKTA SNLPSPCSSS CGPNVNKNQP L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085414e-34DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026770.10.0PREDICTED: growth-regulating factor 8 isoform X3
TrEMBLB9GK640.0B9GK64_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-39growth-regulating factor 8