PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029654.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 276aa    MW: 30768.4 Da    PI: 8.7256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029654.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed ll+++++ +G g+W++ +++ g+ R++k+c++rw +yl
      CCG029654.1 14 RGPWTSKEDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding537.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
      CCG029654.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.087961IPR017930Myb domain
SuperFamilySSF466893.67E-3011108IPR009057Homeodomain-like
SMARTSM007179.6E-121363IPR001005SANT/Myb domain
PfamPF002492.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231568IPR009057Homeodomain-like
CDDcd001672.05E-91661No hitNo description
PROSITE profilePS5129426.61962116IPR017930Myb domain
SMARTSM007174.6E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2669117IPR009057Homeodomain-like
CDDcd001679.95E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRAPCCSKV GLYRGPWTSK EDTLLINYIQ AHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNS HLSKRLKNNT  120
AGNKSKCTGE SAGKRGDTKA NNKRKRKEDN EGIGSRNGEA TTKTKIYLPR ATRVCTSSVA  180
KYINNIQSMI ASSSSNAEDG DHTNWGMSGL EVANNGGQAW ASNNEEFDGL VCDHDPSCPI  240
SLQNDTTLDE IFEEYQRILK ADDHGQLDSF VDSLLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026986.10.0PREDICTED: myb-related protein P-like
TrEMBLB9GL110.0B9GL11_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-65myb domain protein 111