PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029713.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 338aa    MW: 38010.9 Da    PI: 5.5994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029713.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.85.2e-29131191259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDg++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+v+eitY+g+H + 
  CCG029713.1 131 DDGFSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPTVFEITYRGTHSCA 191
                  8***************************98899*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.781125189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-27126191IPR003657WRKY domain
SuperFamilySSF1182904.45E-25129191IPR003657WRKY domain
SMARTSM007741.2E-39130192IPR003657WRKY domain
PfamPF031068.7E-27131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MENGWSWEQK TLITELIQGM ELAKQLRAHL NATSSVESRD MLVRRILSSY EKALLILNWG  60
GSMGQPQNAG VSAGVPESPI SINGSSRSDD FDGSVKDNQG YNEALKKRKT TPRWTDQVRV  120
STDNGLEGHH DDGFSWRKYG QKDILGAKYP RSYYRCTYRN TQNCWATKQV QRSDEDPTVF  180
EITYRGTHSC AHGNQSAPSL EKQEKKLKNT NNNCHQQQSQ QALFNFHNSL RVNTEDLDNK  240
EMVSPFSFPP TNGCTKSEGS FSPFISPATP EPTHYSLSPF QMNNFVGVQN LQHLESDFTD  300
IISANTSATN SPIVDLDFSL DQVDLDPDFP FDSPGFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18131190968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774320.0GQ377432.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026911.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A2K2BUY30.0A0A2K2BUY3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s10490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.18e-77WRKY family protein