PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029785.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

AP2

Protein Properties

Length: 547aa MW: 60419.3 Da PI: 6.6625

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029785.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.3e-15	166	225	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g CCG029785.1 166 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 225 57*****************666664477446***********************98 PP
2	AP2	47.1	6e-15	270	319	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g CCG029785.1 270 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 319 9*************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.1E-12	166	225	IPR001471	AP2/ERF domain
CDD	cd00018	6.73E-23	166	235	No hit	No description
SuperFamily	SSF54171	2.68E-17	166	235	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.256	167	233	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.7E-16	167	234	IPR001471	AP2/ERF domain
SMART	SM00380	5.8E-30	167	239	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-6	168	179	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.41E-18	268	328	IPR016177	DNA-binding domain
CDD	cd00018	2.67E-24	268	327	No hit	No description
PROSITE profile	PS51032	19.375	269	327	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.1E-18	269	327	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-32	269	333	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-9	270	319	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-6	309	329	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000723	Biological Process	telomere maintenance
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007389	Biological Process	pattern specification process
GO:0010073	Biological Process	meristem maintenance
GO:0010449	Biological Process	root meristem growth
GO:0019827	Biological Process	stem cell population maintenance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MNSNNWLSFP LSPTHPSLPA HLHASHPHQF SLGLVNDNME NPFQTQEWSL LNAHQGNNEV 60 PKVADFLGVS KSENQSDLVA FNEIQANESD YLFSNNSLVP VQNAVVGANN TFEFQENASN 120 LQSLTLSMGS ASGKGSTCEP SGDSSTNTVE AAAPRRTLDT FGQRTSIYRG VTRHRWTGRY 180 EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE 240 IEEMKHMTRQ EFVASIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 300 STEEEAAEAY DIAAIKFRGL NAVTNFDMNR YDVKSILESN TLPIGGGAAK RLKEAQAIES 360 SRKREEMIAL GSSFPYGSTS SSSRLQAYPL MQTPFEQPQP LLTLQNQDIS QYTQDSSFHQ 420 NFLQTQLHLH QQSTASNFLH NQSSQNPQYY NSYIQNNPAL LHGLWNMGSS SSVMENNGNS 480 SGSYSAGGYL GNGLGMASNS TGSNAVGSAE ELALVKVDYD MPSSGYGSWS GDSVQGSNPG 540 VFTMWNE

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MNSNNWLSFP LSPTHPSLPA HLHASHPHQF SLGLVNDNME NPFQTQEWSL LNAHQGNNEV  60
PKVADFLGVS KSENQSDLVA FNEIQANESD YLFSNNSLVP VQNAVVGANN TFEFQENASN  120
LQSLTLSMGS ASGKGSTCEP SGDSSTNTVE AAAPRRTLDT FGQRTSIYRG VTRHRWTGRY  180
EAHLWDNSCR REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGTSTTT NFPISNYEKE  240
IEEMKHMTRQ EFVASIRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  300
STEEEAAEAY DIAAIKFRGL NAVTNFDMNR YDVKSILESN TLPIGGGAAK RLKEAQAIES  360
SRKREEMIAL GSSFPYGSTS SSSRLQAYPL MQTPFEQPQP LLTLQNQDIS QYTQDSSFHQ  420
NFLQTQLHLH QQSTASNFLH NQSSQNPQYY NSYIQNNPAL LHGLWNMGSS SSVMENNGNS  480
SGSYSAGGYL GNGLGMASNS TGSNAVGSAE ELALVKVDYD MPSSGYGSWS GDSVQGSNPG  540
VFTMWNE

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269\|PubMed:15454085, ECO:0000269\|PubMed:15635403, ECO:0000269\|PubMed:16424342, ECO:0000269\|PubMed:20190735}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00368	DAP	Transfer from AT3G20840	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin accumulation. {ECO:0000269\|PubMed:15454085}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216409	0.0	AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042075.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor PLT1
Swissprot	Q5YGP7	0.0	PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBL	A0A2K2BA87	0.0	A0A2K2BA87_POPTR; Uncharacterized protein
STRING	POPTR_0003s20470.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4942	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lee DK,Sieburth LE The bps signal: embryonic arrest from an auxin-independent mechanism in bypass triple mutants. Plant Signal Behav, 2012. 7(6): p. 698-700 [PMID:22580686] Hong LW,Yan DW,Liu WC,Chen HG,Lu YT TIME FOR COFFEE controls root meristem size by changes in auxin accumulation in Arabidopsis. J. Exp. Bot., 2014. 65(1): p. 275-86 [PMID:24277277] Tian H,Jia Y,Niu T,Yu Q,Ding Z The key players of the primary root growth and development also function in lateral roots in Arabidopsis. Plant Cell Rep., 2014. 33(5): p. 745-53 [PMID:24504658] Zhao Q, et al. Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche. J Integr Plant Biol, 2014. 56(12): p. 1151-63 [PMID:24831283] Huang JB, et al. ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis. Plant Cell, 2014. 26(9): p. 3501-18 [PMID:25217509] Yang S, et al. The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance. Plant Cell, 2015. 27(6): p. 1670-80 [PMID:25991732] Jia Y, et al. The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development. J. Exp. Bot., 2015. 66(15): p. 4631-42 [PMID:25998905] Zhang M, et al. A tetratricopeptide repeat domain-containing protein SSR1 located in mitochondria is involved in root development and auxin polar transport in Arabidopsis. Plant J., 2015. 83(4): p. 582-99 [PMID:26072661] Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902 [PMID:27001831] Ou Y, et al. RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana. Cell Res., 2016. 26(6): p. 686-98 [PMID:27229312] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis . J Integr Plant Biol, 2017. 59(1): p. 30-43 [PMID:28074634] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938]