PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029895.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 255aa    MW: 29266.9 Da    PI: 9.1596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029895.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.3e-2196146155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+G+r++  +g+W+AeIrdp     + +r++lg++ taeeAaka+++a+k+++g
  CCG029895.1  96 SVYRGIRQRT-WGKWAAEIRDPH----KgARVWLGTYNTAEEAAKAYDEAAKRIRG 146
                  78*****999.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-2296155IPR016177DNA-binding domain
PfamPF008472.0E-1496146IPR001471AP2/ERF domain
CDDcd000181.63E-3096154No hitNo description
SMARTSM003806.6E-3797160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3297155IPR001471AP2/ERF domain
PROSITE profilePS5103223.39397154IPR001471AP2/ERF domain
PRINTSPR003676.0E-1198109IPR001471AP2/ERF domain
PRINTSPR003676.0E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MCGGAIISDF VAVKRGRRLT VEDLWSELDP FSEFLRFDHH SNDNNGSKKD PSNLLFPQKP  60
SYIIQVQQVI TEKVEKPGRA TEKGNGNKKA QRNRKSVYRG IRQRTWGKWA AEIRDPHKGA  120
RVWLGTYNTA EEAAKAYDEA AKRIRGDKAK LNFPSQTPPS TEAPPPAKKR CILAPETAYV  180
ASPFTPPLQE PYFGYQKEDY ELEEQILKLE SFLGLEHDQM AARLRENGGD YRDSGDLWML  240
DDLVTHHQYR RQINY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2198154360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2198154663ATERF1
3gcc_A3e-2198154663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010669.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLU5G9D11e-170U5G9D1_POPTR; Uncharacterized protein
STRINGPOPTR_0008s23260.11e-171(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-48ethylene-responsive element binding protein