PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029921.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 431aa MW: 47960.8 Da PI: 8.5252

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029921.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.2e-05	384	403	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ CgksF r++ L++H++++ CCG029921.1 384 CSRCGKSF-RPEKLHSHMKSC 403 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	6.0E-44	22	312	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MEASSGIPLQ SGSGAGGEVR RIHIIYFLSH NLGRFEHPHL IRVHHFNLNG VYLRDVKRWL 60 ADLRGKDMPK AFAWSYKRRY KNGYVWQDLL DDDLITPISD NEYVLKGSEI FTPPANPFVG 120 SAYGEKKAAD LLMKSENDSQ VENTEVENRA QDHEQLPSPN QICDDTTPRK TTSSEISQES 180 PVFSSEISTV TDDSIKEEED ACKPNDPLEE EQIDIKVEHS SFYTNFLGSK SKKNQKKRID 240 NNGNIEKMGT PSSFSWLSSS TSSSSQATFA KSKSYSSGTS KMLRNLMTCG AVDTNDAALV 300 RQDQKCNSKY KPIEKPADQI CEGQVLGGPA RVFATSWDQQ IQQHDIANAR KSYDEVRGSK 360 KQPGGFGSPK VIPPAYKPVA APICSRCGKS FRPEKLHSHM KSCRGLKTLT KAASAYVEKT 420 PSPSHISVFK I

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MEASSGIPLQ SGSGAGGEVR RIHIIYFLSH NLGRFEHPHL IRVHHFNLNG VYLRDVKRWL  60
ADLRGKDMPK AFAWSYKRRY KNGYVWQDLL DDDLITPISD NEYVLKGSEI FTPPANPFVG  120
SAYGEKKAAD LLMKSENDSQ VENTEVENRA QDHEQLPSPN QICDDTTPRK TTSSEISQES  180
PVFSSEISTV TDDSIKEEED ACKPNDPLEE EQIDIKVEHS SFYTNFLGSK SKKNQKKRID  240
NNGNIEKMGT PSSFSWLSSS TSSSSQATFA KSKSYSSGTS KMLRNLMTCG AVDTNDAALV  300
RQDQKCNSKY KPIEKPADQI CEGQVLGGPA RVFATSWDQQ IQQHDIANAR KSYDEVRGSK  360
KQPGGFGSPK VIPPAYKPVA APICSRCGKS FRPEKLHSHM KSCRGLKTLT KAASAYVEKT  420
PSPSHISVFK I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041982.1	0.0	PREDICTED: protein UPSTREAM OF FLC-like isoform X2
TrEMBL	A0A2K1Z1N7	0.0	A0A2K1Z1N7_POPTR; Uncharacterized protein
TrEMBL	A0A3N7GXT5	0.0	A0A3N7GXT5_POPTR; Uncharacterized protein
STRING	POPTR_0009s02980.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20