PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029935.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 655aa    MW: 72656.2 Da    PI: 10.1533
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029935.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-101565245
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwq 45
                     + W t+E++ll+ avk++G ++W++++ +++          t+++c+ +++
      CCG029935.1 15 QTWGTWEELLLASAVKRHGFKNWDSVSLEIQtktslplVLTTPENCQQKYH 65
                     68*****************************66666664456666666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.11968IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.1E-4966IPR009057Homeodomain-like
SuperFamilySSF466893.26E-51067IPR009057Homeodomain-like
SMARTSM007172.4E-51370IPR001005SANT/Myb domain
PfamPF002493.2E-91566IPR001005SANT/Myb domain
CDDcd001673.00E-51667No hitNo description
SMARTSM002971.5E-15296401IPR001487Bromodomain
SuperFamilySSF473701.96E-16302406IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.8E-14306402IPR001487Bromodomain
PfamPF004397.9E-10309385IPR001487Bromodomain
PROSITE profilePS5001412.057311382IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MAIEEEGKHK NQNQQTWGTW EELLLASAVK RHGFKNWDSV SLEIQTKTSL PLVLTTPENC  60
QQKYHDLNHR FNTNNKLHHH TRKPLDFQEQ HNNINTADNS NTTNKLVNIP WLEELRQLRV  120
AELKQEVQRY DVSILTLQLK VKRLEEEQER SVQGGDSNTQ KSDLKEERPE IEKEHESGKP  180
VSVSGEESDW ENRSVNESNS TGTGGKGGGE DAARELEKLE PVRSGSGEPD PVMSGSNRKE  240
VEEGGGGGGD GGEESCEVGD SVNQLSSESL SSGRKRKGRE RKEFSVTGGD ETVVVCSVKS  300
EPLVGFLEMI RAHKNGSLFE SLLENQEMDV YKDMIRQHMD LEAIQTKLEQ GSYSSSSLLF  360
FRDLLLLFNN ALVFFPKHSV QSLAAHELRS LVSNEMRKET QSSDSSVMPE NIPPQPKSEL  420
ERSDSLLSKH KSSIPVIVCR KRSSISVKPS SSSLGQKIEQ QQQQSNENKS VNDLKPPTVE  480
QGLLKKKSDE KPVTGVRSSR RGKKNLAKGS SSPSKKQNTS PDSKAAVPDK PETPKTEKKK  540
GEALTLEKKK SAVDFLKRIK KNSPAETPKK NGRVASNGGG ERKKEGSGGK GETGKDRVLR  600
KSSEKKPGKQ ESSPAKRNVG RPSKKAAEVS KVSGKRGRDI GGKEAAKRPR KRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275282RKGRERKE
2646654KRPRKRSRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481910.0EF148191.1 Populus trichocarpa clone WS0128_J05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042005.10.0PREDICTED: uncharacterized protein LOC105137816 isoform X1
TrEMBLU5GV420.0U5GV42_POPTR; Uncharacterized protein
STRINGPOPTR_0009s02810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.17e-86DNA-binding bromodomain-containing protein