PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029944.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 282aa MW: 32104.7 Da PI: 5.0953

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029944.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.8	1.2e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl +iv + CCG029944.1 6 DTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTLNSLHLKQCVQTFNVFDFLREIVSK 86 5789*************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	1.4E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK 60 TLNSLHLKQC VQTFNVFDFL REIVSKVPDL GGPDAAFDEH GIAKRRKVAD DEDNYSDEER 120 NRSRRHETTQ TSSSGRGRGR GRGRGRGRGR GTRPMERETA AQDGKFEDDP DIVHHDDKHS 180 PNLGRLDKEY EPEDFKDNIP AGRNLRTPVH DFDLNLDLDE NGETKPVLAS VPASYSTKPI 240 PELKHEEVPG WSLADIERMD IDPIQLANLN TRIDEEDYDE ED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-23	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	149	RGRGRGRGRGR
2	141	150	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042017.1	0.0	PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBL	B9SB51	1e-118	B9SB51_RICCO; Negative cofactor 2 transcriptional co-repressor, putative
STRING	POPTR_0001s23260.1	1e-120	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-66	nuclear factor Y, subunit C11