PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029961.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 311aa    MW: 34443.7 Da    PI: 8.2853
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029961.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.4e-19181214134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  CCG029961.1 181 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 214
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-13175215No hitNo description
SMARTSM004019.9E-22175226IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-15179214IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.73179211IPR000679Zinc finger, GATA-type
CDDcd002027.03E-12180208No hitNo description
PROSITE patternPS003440181206IPR000679Zinc finger, GATA-type
PfamPF003209.2E-17181214IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTPVCLNLAS SSFPFVDLKE EQHLQLFLSP HQAATSLSGP TNFFNTTHDQ RESKLAESRQ  60
HDDHEARTAC FNCMVDKYSI SLGRSSDHKL FPSPSFQPVV NDDDDSNFHK LFSSKTEDGT  120
EGSGDSSVNW MPSRMTTMQE MTNSNRSETD HQPMKFMLKF HNQQCQNNDI NSSSNGNIRV  180
CSDCNTTSTP LWRSGPRGPK SLCNACGIRQ RKARRAMAAA ENGAVISVEA SSSTKSKVNS  240
KVKKLRTSHV VQGKKLSNKP PNPPLQSQKE LCFKNLALSL SKNPALIQVL PHDVEEAAIL  300
LMELSCGFIH S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485100.0EF148510.1 Populus trichocarpa x Populus deltoides clone WS0131_P03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010724.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A2K1WW780.0A0A2K1WW78_POPTR; Uncharacterized protein
STRINGPOPTR_0006s24560.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-15cytokinin-responsive gata factor 1