PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030219.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family RAV
Protein Properties Length: 345aa    MW: 38942.3 Da    PI: 8.1792
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030219.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.31.1e-094592154
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                 s++kGV   + +g W ++I+       + +r++lg+f ++ eAa a++ a+ kl+
  CCG030219.1 45 SRFKGVVPQP-NGHWGCQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKLR 92
                 6899998777.8******999......44**********99************98 PP
2B384.11.2e-26168265186
                  EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  f k+ltpsdv+k++rlv+pkk+a ++              +k  ++ l ++d+s + W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++vF l +
  CCG030219.1 168 FRKELTPSDVGKLNRLVIPKKYAIKYfpnisesaeedlAADKVVDVILAFYDKSMKLWKFRYCYWKSSQSYVFTRGWNRFVKEKKLKANDSIVFCLCE 265
                  89**************************99999888885566688999**********************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-1545101IPR016177DNA-binding domain
CDDcd000183.57E-2245103No hitNo description
PfamPF008478.0E-64592IPR001471AP2/ERF domain
SMARTSM003802.6E-1946107IPR001471AP2/ERF domain
PROSITE profilePS5103217.01646101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1746101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-33161286IPR015300DNA-binding pseudobarrel domain
CDDcd100178.93E-26167269No hitNo description
SuperFamilySSF1019361.09E-27167269IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-24168266IPR003340B3 DNA binding domain
SMARTSM010192.3E-22168283IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238168283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEEENVSLIL NAETPAVEEL SDSNSSTQPF PPSKRARSGC NVSASRFKGV VPQPNGHWGC  60
QIYANHQRIW LGTFKSEREA AMAYDSAAIK LRSGDSRRNF PPTDITVEEP KFQSYYSIEV  120
VLAMIKDGTY QSKFADFIRT CSQSVGTALS LKLMMQQSSE GLACKQLFRK ELTPSDVGKL  180
NRLVIPKKYA IKYFPNISES AEEDLAADKV VDVILAFYDK SMKLWKFRYC YWKSSQSYVF  240
TRGWNRFVKE KKLKANDSIV FCLCESGETV DSAAQTFQMI DVSNCENSSN VAESSNQSIA  300
SKVELQLLQE EGIKKKVEED RMVRADKTTH DAVKTGFKLF GMQIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-2916426210101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158400.0AC215840.1 Populus trichocarpa clone POP043-C12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033440.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_011033441.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_011033442.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P53e-99RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3N7F9G40.0A0A3N7F9G4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-101RAV family protein