PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030263.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

S1Fa-like

Protein Properties

Length: 88aa MW: 9720.46 Da PI: 10.1892

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030263.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	136.4	6.7e-43	23	88	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+ggl+l+flvgny+ly yaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe CCG030263.1 23 DAEPKGLNPGLIVLLVIGGLVLTFLVGNYVLYSYAQKTLPPRKKKPISKKKMKKERLKQGVSAPGE 88 5799*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	3.0E-40	24	88	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MDDDFEFANS PPSFQNMGDL IKDAEPKGLN PGLIVLLVIG GLVLTFLVGN YVLYSYAQKT 60 LPPRKKKPIS KKKMKKERLK QGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU224206	1e-143	CU224206.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010852.1	3e-57	PREDICTED: DNA-binding protein S1FA
Swissprot	Q42337	2e-15	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A9P8W5	5e-33	A9P8W5_POPTR; S1Fa-like family protein
STRING	POPTR_0016s08890.1	8e-34	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55