PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030357.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 169aa MW: 18529.8 Da PI: 8.8521

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030357.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	167.9	7e-52	2	160	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvP...stslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ +se+vCyv+CnfCntil+v++P +++l+++vtvrCG C++lls+n ++++ + + ++++ ++ ++s+st + CCG030357.1 2 SLDIASERVCYVHCNFCNTILVVNIPcsaNSTLLNTVTVRCGRCANLLSLNTGSLL--QTSHPQ-----------NSHKQNLLYQDLSGGSQSSSTGN 86 56789*******************333346899**********7766554..444443...........22233333333444455566666 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ l+ +++e+ r+ + k+qr Psaynrfikeei+rik +nP+ishreafs aaknWah+P+ h gl CCG030357.1 87 RVSALEPSQNEQPGRTVAMHAATGKKQRTPSAYNRFIKEEIRRIKEKNPEISHREAFSNAAKNWAHLPHTHSGL 160 66677778888888888889999**********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-60	6	160	IPR006780	YABBY protein
SuperFamily	SSF47095	2.36E-8	104	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.9E-6	110	155	IPR009071	High mobility group box domain
CDD	cd01390	8.95E-6	114	154	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSLDIASERV CYVHCNFCNT ILVVNIPCSA NSTLLNTVTV RCGRCANLLS LNTGSLLQTS 60 HPQNSHKQNL LYQDLSGGSQ SSSTGNRVSA LEPSQNEQPG RTVAMHAATG KKQRTPSAYN 120 RFIKEEIRRI KEKNPEISHR EAFSNAAKNW AHLPHTHSGL TLNDTGMDA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042560.1	1e-124	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	1e-48	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A3N7G523	1e-109	A0A3N7G523_POPTR; Uncharacterized protein
STRING	POPTR_0016s06760.1	1e-119	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-51	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]