PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030524.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 238aa    MW: 26721.3 Da    PI: 8.3119
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030524.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18191224235
         GATA   2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  ++C+t  Tp+WR+gp g+ktLCnaCG++yrk+++
  CCG030524.1 191 QSCNTDVTPMWRKGPLGPKTLCNACGIKYRKEEE 224
                  38*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.2E-13184233IPR013088Zinc finger, NHR/GATA-type
SMARTSM004018.5E-12184238IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-11184229No hitNo description
CDDcd002022.30E-9187219No hitNo description
PfamPF003209.5E-16192224IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.607192226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDSEWFDRAT DHWNGGCDHQ NNTESNVDLT LKLGLPDDHD DQPQFEQYFR SNRALKTHQP  60
AILSFNAPCS QGTNHQDMAN AGLNHHWRLN GDNLHGSWPQ EMMGNHLHYM NTQYAADSAV  120
GFAAHPKSYS SINSNPGNFQ MPTMKGRTIL NTVARDGDHG ENGSSTGSRR RGPSRQCKGT  180
FSDHDKRCSN QSCNTDVTPM WRKGPLGPKT LCNACGIKYR KEEEKRRARE AAKRAHGN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025223.10.0PREDICTED: GATA transcription factor 29-like
TrEMBLA0A2K2BAH11e-131A0A2K2BAH1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s21770.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-13GATA transcription factor 29