PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030557.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 512aa    MW: 55476.6 Da    PI: 7.016
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030557.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30273331259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+ kg+++pr+YYrC+++ gCpv+k+v+r+aed++++++tYeg+Hnh+
  CCG030557.1 273 SDGCQWRKYGQKMAKGNPCPRAYYRCSMTvGCPVRKQVQRCAEDKTILITTYEGNHNHP 331
                  7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-33257333IPR003657WRKY domain
SuperFamilySSF1182901.7E-27265333IPR003657WRKY domain
PROSITE profilePS5081130.079267333IPR003657WRKY domain
SMARTSM007742.1E-36272332IPR003657WRKY domain
PfamPF031062.3E-26274331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDQQGRELVF MHSVDFLRQS PGVSDHLNDY SSGDHTKPTM KEVDFFSTDR NGKSPSEHQE  60
MKINIGSSSR VDSSLNTGLN LSTSSSGISI IANAKEPNDN ELEDLVLQLR VLRGELGRQH  120
DENKKLRSLL DQITKSYKEL QAQLLVAMQK QTRGCRIEQK GELNDTSTPV MSAQLLMDPR  180
PSATLDANIE PLVPDDKTQE MLFSLTNTME TKSQVSGKRA SIEDSNIDQT SQSLGSPKSP  240
RLEEEKPNEQ VPEVPFRKAR VSVRARSEAP LISDGCQWRK YGQKMAKGNP CPRAYYRCSM  300
TVGCPVRKQV QRCAEDKTIL ITTYEGNHNH PLPPAATVMA NTTSAAATML LSGSTSSREC  360
LSSSSCFYPS LPYASTMATI SATAPFPTIT LDLTHGPNST MPFPCTSPSS VTFPLPLHGC  420
PQLPGNPMYV APKLPAIPSV QLGQLHGSMV ETVTAAIASD PNFTAALAAA ISTFMGTPRS  480
RDGSNNLSTP SVIPGLPGSP QIPQSCTTFS TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22259335176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025270.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLB9GTA40.0B9GTA4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.16e-92WRKY family protein