PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030594.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 527aa    MW: 59054.7 Da    PI: 6.2858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030594.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.93.8e-4031342128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  p+GfrFhPt+ee++ +yLk+k++g+++ ++++i evd+y+ +Pw+Lp  ++++++++ wy+F++ d k++++kr++r tk+gyWk+tgk ++++++ +
  CCG030594.1   3 PVGFRFHPTEEEIIRYYLKHKMDGRDFLVDDHIGEVDLYRRDPWELPdsARITSNDRVWYYFCRLDYKHSNSKRASRETKNGYWKSTGKVRDIKARrT 100
                  89***************************99***************96448888999*************************************9878 PP

          NAM  97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  ge++g+k+tLvf   + +++k + t+Wv+he+++
  CCG030594.1 101 GEVIGTKRTLVFQyrRPDSKKVVGTSWVIHEFHA 134
                  899*********743346667778********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.0732152IPR003441NAC domain
SuperFamilySSF1019416.15E-433150IPR003441NAC domain
PfamPF023651.6E-223133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAPVGFRFHP TEEEIIRYYL KHKMDGRDFL VDDHIGEVDL YRRDPWELPD SARITSNDRV  60
WYYFCRLDYK HSNSKRASRE TKNGYWKSTG KVRDIKARRT GEVIGTKRTL VFQYRRPDSK  120
KVVGTSWVIH EFHARTSTPD QRALVLCKLK DKADDSAANL PDDEGEPILV MGSNVENNAV  180
LNNNQEVDAL QSFIDNHGAS FGFLSALQSQ NHVQNNNQEV DAALLQSLID NHGASFGFPS  240
ALESQNHVQN NNQEVDAEQL QFLIDSQEAG FDSPSALQSQ NLDDLDEEDV IDFADSLLIA  300
PDEYGVEIPP HLLNDYTPPT PRSSSNAYVL DSSGRETYLG YGESPNLYGG HGSSRAYRQR  360
QMAHSDDTLL MGPSSMDSTT VTRHEQINLI QSDFPRIHKA QHAPIPHSFM EHEGISAKGD  420
QLLGGISSTA SKHKAREGAR QVVNSGLPKK VGIESVKDRK IVQVMNAKPA VKSRSNGSAG  480
NERWGRFIHL ETTTSSHTST PPSVYLFNLV LGLFLFLIML REVLIVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-26313216138Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025326.10.0PREDICTED: NAC domain-containing protein 69-like isoform X1
TrEMBLA0A3N7EJH70.0A0A3N7EJH7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s18280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14584713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.12e-36NAC domain containing protein 62