PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030765.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 308aa    MW: 34590.7 Da    PI: 9.638
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030765.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-072872345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E + + +a + + ++    W+++a++++ g+t ++++  + 
      CCG030765.1 28 KWTIAENKAFENALAIYDKEtsdKWHKVAAMIP-GKTVEDVIKQYK 72
                     8******************9*************.*******98886 PP
2Myb_DNA-binding44.24.5e-14137181347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +   Rt+ q+ s+ qky
      CCG030765.1 137 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVISRTPTQVASHAQKY 181
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.04E-92474IPR009057Homeodomain-like
PROSITE profilePS512939.662479IPR017884SANT domain
SMARTSM007171.2E-62577IPR001005SANT/Myb domain
CDDcd001671.44E-62874No hitNo description
Gene3DG3DSA:1.10.10.601.4E-12129186IPR009057Homeodomain-like
PROSITE profilePS5129420.359130186IPR017930Myb domain
SuperFamilySSF466891.27E-16132185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17133185IPR006447Myb domain, plants
SMARTSM007175.6E-13134184IPR001005SANT/Myb domain
PfamPF002492.5E-12137181IPR001005SANT/Myb domain
CDDcd001675.98E-11137182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKWETEILSP GSYLSSSNWL TEESKNTKWT IAENKAFENA LAIYDKETSD KWHKVAAMIP  60
GKTVEDVIKQ YKELELDVSY IEAGLIPVPG YSSSPFTLDW VNGNGYGYDG FKQSYGLGGK  120
RSSTGRPTDQ ERKKGVPWTE EEHKLFLMGL KKYGKGDWRN ISRNFVISRT PTQVASHAQK  180
YFIRQLSGGK DKRRASIHDI TTVNLNETRT PSPDNKTTSP DQSGAISQHP NSAAMPRTHF  240
QWNQPNSGAT MAFNSTNATM FMSSPYGINS YGLKMQGQNP LRVVVHDSYI GQQTMGFQMQ  300
SAQHYPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1629941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032151.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_011032152.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-142DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9HP730.0B9HP73_POPTR; MYB family protein
STRINGPOPTR_0009s04730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-104Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]