PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG030813.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 185aa    MW: 20783.7 Da    PI: 5.5586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG030813.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113254123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ Fs+   L  H++ H
  CCG030813.1 32 YECTFCKRGFSNAQALGGHMNIH 54
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.77E-72959No hitNo description
Gene3DG3DSA:3.30.160.602.7E-52958IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00993254IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5723259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMDTDDQTSH ENPDQVTLDH EQEQGTSQAR SYECTFCKRG FSNAQALGGH MNIHRKDKAK  60
LKHSSRETQQ SLDIPKINPS FSPAITSLME SERDESSIKW PFSIVDKAAG SDHDDTKRDK  120
TQVGEIQKLG FFVQNSSSTE DHQNPSSQVH GISKKSDLSS SSEIDLELRL WPEPQESSPG  180
TKKFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032298.11e-134PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A2K1Z2991e-109A0A2K1Z299_POPTR; Uncharacterized protein
STRINGPOPTR_0009s04190.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-18C2H2 family protein