PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG030984.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 331aa MW: 37774.8 Da PI: 8.3283

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG030984.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00065	162	178	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r nL+ CCG030984.1 162 FSCPLCFKTFNRYNNLQ 178 89***********9997 PP
2	zf-C2H2	16.6	2.2e-05	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF k + ++H +++ CCG030984.1 254 FMCRKCGKSFAVKGDWRTHEKNC 276 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.38E-6	238	274	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-6	250	274	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.787	254	274	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MADPCFNLIT GSFNFMPLNP HYTAFTSYPN NHLFNTKSSI PFAQPQKEAP SLVEYLRPIR 60 QQEDHLESSS SSMEEDRNMK KDDENLFFST ADGNDKPVSV VLRIGLPNPS SNLQRVLGVS 120 PSANGPDKED ISAVSGYPLE KLNKDQYWIP TPSQILIGPS QFSCPLCFKT FNRYNNLQAC 180 HIFSKHMHMW GHGSQYRKGP DSLRGTQPTG MLRLRCYCYA QGCKHNIDHP RARPLKDFRT 240 LQTHYKRKHG IKPFMCRKCG KSFAVKGDWR THEKNCGKIW YCICGSDFKH KRSLKDHIKA 300 FGHGHAAFGI DCFEEEDELA SESEHDCESS M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208479	0.0	AC208479.1 Populus trichocarpa clone JGIACSB1081-D15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025425.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-116	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2K1Z3R3	0.0	A0A2K1Z3R3_POPTR; Uncharacterized protein
STRING	POPTR_0009s06700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-112	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]