PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031031.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GeBP

Protein Properties

Length: 375aa MW: 41657.9 Da PI: 9.256

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031031.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	115.8	2.6e-36	94	190	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++++++k ++ ++ d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgk++ f+++hdq +fe+s+kiW CCG031031.1 94 LFQRLWTDEDEIELLQGFLEYTTKGTANHHHnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKINSGKDFCFKSPHDQATFEISRKIWS 190 79*****************77766655445**************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.8E-34	95	190	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MTPCPKMMTS YPKNYSKTMT PPPPPLSPRP PSPPSPRPPS PPTTASIPAV TTTTTTMVAT 60 DSTLDASKRQ RVSPETTVLS QDSKKPQFDD TRRLFQRLWT DEDEIELLQG FLEYTTKGTA 120 NHHHNDTALF YDQIKSKLQL DFNKNQLVEK LRRLKKKYRN VLNKINSGKD FCFKSPHDQA 180 TFEISRKIWS STGKIAGFSN EDGNNLDDDD GGNPNYNNHT VMMDGDVVVK IEDHKSTPRS 240 RKRSRSRSVG VKMEENRVLN DGFVGNETNV TGGGGGTGNG NVSSVIEETV RSCLSPLFKE 300 LSSNMAGAGM GGVGRGVGRL AMNATPLSFG AGDAMMMDEK WRKQHILELE VYSKRLELLQ 360 DQIRAQLDEL RSMGD

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MTPCPKMMTS YPKNYSKTMT PPPPPLSPRP PSPPSPRPPS PPTTASIPAV TTTTTTMVAT  60
DSTLDASKRQ RVSPETTVLS QDSKKPQFDD TRRLFQRLWT DEDEIELLQG FLEYTTKGTA  120
NHHHNDTALF YDQIKSKLQL DFNKNQLVEK LRRLKKKYRN VLNKINSGKD FCFKSPHDQA  180
TFEISRKIWS STGKIAGFSN EDGNNLDDDD GGNPNYNNHT VMMDGDVVVK IEDHKSTPRS  240
RKRSRSRSVG VKMEENRVLN DGFVGNETNV TGGGGGTGNG NVSSVIEETV RSCLSPLFKE  300
LSSNMAGAGM GGVGRGVGRL AMNATPLSFG AGDAMMMDEK WRKQHILELE VYSKRLELLQ  360
DQIRAQLDEL RSMGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	246	KRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025503.1	0.0	PREDICTED: mediator-associated protein 1-like
Swissprot	F4K5T4	1e-89	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	U7DVZ7	1e-158	U7DVZ7_POPTR; Uncharacterized protein
STRING	POPTR_0009s06130.1	1e-174	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	8e-57	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]