PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031072.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 322aa    MW: 35266.9 Da    PI: 6.7976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031072.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-21124173255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+t+e Aa+a+++a+++++g
  CCG031072.1 124 KYRGVRQRP-WGKWAAEIRDPM----KaARVWLGTFDTPEAAARAYDEAALRFRG 173
                  8********.**********83....46************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-33123182IPR001471AP2/ERF domain
PfamPF008478.9E-15124173IPR001471AP2/ERF domain
SMARTSM003802.0E-39124187IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-23124182IPR016177DNA-binding domain
CDDcd000182.73E-25124183No hitNo description
PROSITE profilePS5103225.58124181IPR001471AP2/ERF domain
PRINTSPR003672.1E-11125136IPR001471AP2/ERF domain
PRINTSPR003672.1E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLPDSSRERE MSIMVTALTL VVAGNVPADD SDSSTAFSNN HGDFIHGGLS AKREREEEGG  60
CSEENERLCR AFADDFLHGD SSTAGRATGI SVVTTSTVTP ASTQMTFTPV YEHNETRRDE  120
PQRKYRGVRQ RPWGKWAAEI RDPMKAARVW LGTFDTPEAA ARAYDEAALR FRGSKAKLNF  180
PENVKLRPSP PPSPTANQLT VSDSPSSGLL YLSTSSEFML HSQALHHTQN REISREQVSQ  240
PQLILGVGGY EKQPVSLHDQ MFLSSSFASS NSSSSSTKPS DRMPFPAQKP GEFRPATSSQ  300
SGGNDCQLPA WSGYSHYNSS SR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22123184163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025557.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLB9HGC60.0B9HGC6_POPTR; Uncharacterized protein
STRINGPOPTR_0007s07090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-28ERF family protein