PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031082.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 232aa    MW: 26254.8 Da    PI: 9.6202
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031082.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.9e-31155213159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+ k++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  CCG031082.1 155 LDDGYKWRKYGQKVGKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHS 213
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-33140213IPR003657WRKY domain
SuperFamilySSF1182909.42E-28147213IPR003657WRKY domain
PROSITE profilePS5081128.713150215IPR003657WRKY domain
SMARTSM007746.0E-35155214IPR003657WRKY domain
PfamPF031061.6E-24156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAAAPQATLN QQPLFEDQEM PTQMGFFSFP PHLTYPQSAS CHQSLKGFII PPSLAADAPS  60
TTNIAETLLL SSATHKQREG TIASDLGGHP LLSLQRSRAN LWAWGEVNEC LSRKRSGSGE  120
DHLGLSSIKM KKIKARRKVR EPRFCFKTMS DVDVLDDGYK WRKYGQKVGK NTQHPRSYYR  180
CTQDNCRVKK RVERLAEDPR MVITTYEGRH AHSPSLDLEE SQAPSQLNNF FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25146212874Probable WRKY transcription factor 4
2lex_A1e-25146212874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1452930.0EF145293.1 Populus trichocarpa clone WS01122_O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025576.11e-176PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB77e-57WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A3Q9EFG11e-170A0A3Q9EFG1_POPTO; WRKY DNA-binding protein 13
STRINGPOPTR_0007s06930.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-59WRKY DNA-binding protein 13