PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031094.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 191aa    MW: 21837.1 Da    PI: 8.4395
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031094.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29101159159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +dDg++WrKYG+K+vk+s++pr+YY+C+s+gC+vkk+ver++ed ++v + Y g Hnhe
  CCG031094.1 101 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSSGCNVKKRVERDREDSRYVLTSYDGVHNHE 159
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-3187161IPR003657WRKY domain
SuperFamilySSF1182902.48E-2693161IPR003657WRKY domain
PROSITE profilePS5081131.06696161IPR003657WRKY domain
SMARTSM007742.6E-32101160IPR003657WRKY domain
PfamPF031062.0E-22102159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDYHQNPKPS CNYSYIKEGL DPWTIEFQPS DYLMLDDGFG EDDSSSQNMV SSEQVASGSS  60
TGYSGATSRN NSIKCRNGVK KNKREVEHRV AFRTKSELEI MDDGFKWRKY GKKSVKNSPN  120
PRNYYKCSSS GCNVKKRVER DREDSRYVLT SYDGVHNHES PCMVYYNNQM PLMASNAWTL  180
QPSSLHSSSF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2489161274WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774360.0GQ377436.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025588.11e-142PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A2K1ZR011e-125A0A2K1ZR01_POPTR; Uncharacterized protein
STRINGPOPTR_0007s06720.11e-122(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.17e-45WRKY DNA-binding protein 51