PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031249.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 346aa    MW: 37384.1 Da    PI: 4.119
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031249.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.69e-151560649
                 HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE..E-TTSEEEEE CS
       SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevavii..fsstgklyey 49
                   +r+vtf+kRr+g++ KA  L+  Cda++a+++  ++s+ k+y++
  CCG031249.1 15 AEQRSVTFTKRRQGLFNKAADLCRICDAQIAIMVssAGSKEKVYTF 60
                 568*****************************99444689999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-18163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.404262IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-8424IPR002100Transcription factor, MADS-box
CDDcd002662.64E-19575No hitNo description
SuperFamilySSF554558.5E-18576IPR002100Transcription factor, MADS-box
PfamPF003194.1E-141560IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-82439IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-83960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGRTRKIPMV KRETAEQRSV TFTKRRQGLF NKAADLCRIC DAQIAIMVSS AGSKEKVYTF  60
GHSSVDAVFD RFLYNFTAAP EAVAYEAGIK SASNSLYEEI KALEGDVNTL MRNNKRNGGG  120
VLWDSLEEIE RSSTSVEELQ NVVDILESLL GQAKNKMNNA TGNLGISIAV EPRSDDFLAL  180
EPKPQDDSSS SLGGDQIGQN SAIVGDDGAH YSASYWNADG STTDSGMDFP VEIDVDLIWN  240
LLEPSDFSSG SDKVISINNS SDCTTSGTAS ESAAGSQENE DSILLTTNLD SELFKDIELV  300
DCGTYNTTPD PVSGDIDQHY AMDGDCNAKL HDSALITLNK SFEGPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043030.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2K1YC160.0A0A2K1YC16_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14582714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-18AGAMOUS-like 62