PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG031350.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 296aa MW: 32834.1 Da PI: 4.9796

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG031350.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.8	4.9e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r+ + + +t+ ++ +v++ ++fdfl +iv r CCG031350.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTHEITLQRGAKTMSALHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.6E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	3.46E-20	4	92	IPR009072	Histone-fold
Pfam	PF00808	2.0E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT HEITLQRGAK 60 TMSALHLKHC VQSYNVFDFL REIVSRVPDY SHGHSDSTDH RPLQKRKPTG DECNDSDEEL 120 KRSRMHEMSH AGSSGRGRGR GRGRGRGRGV RNIERESSSR DLEPESCTTV QQSIKNNTNP 180 EVVMDNGSES KESVMDNNRV SDATNQPERN FDLNAEVNDS EDAKAAAAPA AATTTTTTTT 240 TTSAPSSSAE PAAETNHEEY PGWSLSEMDK MVIDPLQLAQ LSERSDEVEE DYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-19	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	147	RGRGRGRGRGR
2	139	148	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020469.1	0.0	PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBL	B9GXA0	1e-163	B9GXA0_POPTR; Uncharacterized protein
STRING	POPTR_0003s19130.1	1e-164	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-74	nuclear factor Y, subunit C11