PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031537.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 176aa    MW: 20472.5 Da    PI: 10.3517
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031537.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.2e-23959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krie k+ rq+tfskRrn ++ KA  LSvLCd++va+++fss+gklye+ss
  CCG031537.1  9 KRIEKKICRQITFSKRRNRLIEKARDLSVLCDVQVALLVFSSSGKLYEFSS 59
                 79***********************************************96 PP
2K-box462.2e-16881741197
        K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  e  + +++++++   + +++ q+ +R++   + e+L+l +L+q e qL+ +l++ R++K++l+le i+ l  kek l+een++L+++
  CCG031537.1  88 ELYHGKYEKKIKSYAELLQTVQSIHRQVGNSNFEELTLSDLEQTEMQLDAALRRTRARKTQLMLETINALHDKEKTLREENQRLQTQ 174
                  45566677777777777778889999999999****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-30160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.174161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-27280IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.1891176IPR002487Transcription factor, K-box
PfamPF014869.6E-1396174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGRKKVELKR IEKKICRQIT FSKRRNRLIE KARDLSVLCD VQVALLVFSS SGKLYEFSSA  60
GSLAKILKRH RSYFEEKTAL SNGANDAELY HGKYEKKIKS YAELLQTVQS IHRQVGNSNF  120
EELTLSDLEQ TEMQLDAALR RTRARKTQLM LETINALHDK EKTLREENQR LQTQQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-16182181MEF2 CHIMERA
6byy_B2e-16182181MEF2 CHIMERA
6byy_C2e-16182181MEF2 CHIMERA
6byy_D2e-16182181MEF2 CHIMERA
6bz1_A2e-16182181MEF2 CHIMERA
6bz1_B2e-16182181MEF2 CHIMERA
6bz1_C2e-16182181MEF2 CHIMERA
6bz1_D2e-16182181MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020773.11e-125PREDICTED: MADS-box transcription factor 14-like isoform X3
TrEMBLA0A3N7EPP91e-117A0A3N7EPP9_POPTR; Uncharacterized protein
STRINGEOX997866e-52(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14472412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.17e-41MIKC_MADS family protein