PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031546.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 691aa    MW: 79064 Da    PI: 9.5082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031546.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08485524345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT+eE +l+ + ++++G++ Wkt a+ +g  + + ++k+ w+
      CCG031546.1 485 SWTPEEYDLIRKFHEKHGSD-WKTLAEALG--KHRFHVKDTWR 524
                      7*******************.********9..56777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.6409480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-4412492IPR009057Homeodomain-like
PROSITE profilePS500906.934478527IPR017877Myb-like domain
SMARTSM007170.4482529IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-8482537IPR009057Homeodomain-like
PfamPF139213.4E-12486544No hitNo description
Gene3DG3DSA:1.10.10.605.2E-7493501IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-8502544IPR009057Homeodomain-like
PROSITE profilePS500907.387528596IPR017877Myb-like domain
SMARTSM007172.2532598IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-7572595IPR009057Homeodomain-like
SuperFamilySSF466891.92E-5576658IPR009057Homeodomain-like
PROSITE profilePS500907.039598651IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MGTKTVGRQQ HEKRKTKNED DSLKAKDSLL VSGGEGLTLN MECKKKTKKK KSEGHEDSIE  60
DSAASSRLSE GNVNAAGKGE KKEKKSEKYE LVSSSLSEGN VDLNNAADKK EKKRKLERVN  120
NEKEPQVSKK KNKMSEVREA LGETHMRMDD NLGLQKNVQV DFVSNSESEV RRDRKKNHKE  180
KNREGKAITV SSVLNSIDDN RRGEVFEVQK GPGNEDIANM NNREGQGRKK EKKRKQNKYD  240
DGRGDTEIVN SVADGKDAGR EESIEVVQDK VESSKKEKKK KKKKLNVVLE AASMQIMAET  300
TGNQNSVIEG DGGNRSSIKN KARDGKLKVN AEGGNKRKKK AKSLENRSKE KSSERVTEME  360
EDAESTRPSE KSFKKVTSKR VSFCEDVEIF PSSDGPSDKK AVGEDGFVRG KRFSLEEDEM  420
VKEAVLNYIN VHCLGADGLN MVLNCKKHPA IKHCWKEIGA ALHWRPRESV YYRAHILFER  480
DQNSSWTPEE YDLIRKFHEK HGSDWKTLAE ALGKHRFHVK DTWRRIKLIN MKKGKWSQDE  540
YQSLFDSVNL DLRLKAFVER KTKHGMLRDN ISWTAISEKL ETRTDALCCQ KWYDQLTSPM  600
VAEGKWLDTD DYRLLMELYD LDACCMEDVD WDNLLEHRSG DLCRKRWNQM VKHLGDHRNK  660
SFADQVDVVI NRYCPDVLEA REAYNSKPAV P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235KKEKKRKQ
2274282KKEKKKKKK
3276284EKKKKKKKL
4277283KKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020798.10.0PREDICTED: myb domain-containing protein YDR026C-like
TrEMBLA0A2K2B8D00.0A0A2K2B8D0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67041931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-132MYB_related family protein