PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031571.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 522aa    MW: 57090.6 Da    PI: 5.9044
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031571.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-061243435
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                   C+ ++e+ + l+C+ ++  lC  C ++ H+
  CCG031571.1 12 VPCDFCSEQTAVLYCRADSAKLCLFCDQHVHS 43
                 57**************************9995 PP
2zf-B_box201.5e-065494337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                 +++C++++++ ++  C +++  lC++C    H +      H
  CCG031571.1 54 AQICDNCNSELVSVRCATDNLVLCQECDWDAHGScsvsasH 94
                 689************************99888436666666 PP
3CCT64.14.2e-22474517144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk +
  CCG031571.1 474 RGDAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKTT 517
                  6789*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.9E-13956IPR000315B-box-type zinc finger
PROSITE profilePS5011910.096956IPR000315B-box-type zinc finger
CDDcd000211.21E-71256No hitNo description
PROSITE profilePS501199.5565299IPR000315B-box-type zinc finger
CDDcd000217.54E-65685No hitNo description
SMARTSM003363.35799IPR000315B-box-type zinc finger
PfamPF062031.3E-16474516IPR010402CCT domain
PROSITE profilePS5101714.922474516IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MVTHKSKTKK TVPCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRAQICDNC  60
NSELVSVRCA TDNLVLCQEC DWDAHGSCSV SASHDRTIIE GFSGCPTALD LASIWGFDLE  120
EKKQEPLIEN WSSNNCGVVH DLVNEPWVYN KSSGNFSFQD LMVPNENGNN GNRNVDNVMV  180
FGNVSKSPSC GKYKHVIYKQ LVELLKRDLM GGGGEGGGGG GDEGVDFGDG EGCDFGGGDG  240
REGENLVPET QSSSAWGEGV GFGNGNGGRF GNDNVGGGGC DGNVRGEQLL HEQMPFTSLL  300
MLPTEVGVKS NGKLVGEDIM WDGNANAHGT QIWDFHLGQL RSHDESGQLE IEYGANEAGF  360
VIKNFSEPMK ETSLTNTKML GNMYQMNSSI VHDDMASFNN NLNNNLTSSQ GLATSESNNL  420
PIARVLSGTA FCKPKCSGSS KDVQFMEQSI LVRGEGFKTE SATKVDMELL VRNRGDAMQR  480
YKEKKKTRRY DKHIRYESRK ARADTRKRVK GRFVKTTEAP DC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977058e-45KC297705.1 Populus tomentosa COL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020832.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like isoform X1
RefseqXP_011020833.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 15-like isoform X1
TrEMBLU3Q0450.0U3Q045_POPTO; COL
STRINGPOPTR_0001s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-61B-box type zinc finger protein with CCT domain