PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG031922.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 243aa    MW: 27827.8 Da    PI: 9.0507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG031922.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
      CCG031922.1 14 KGAWTREEDKRLVAYIQAHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding58.81.2e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
      CCG031922.1  67 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.399961IPR017930Myb domain
SuperFamilySSF466891.33E-2913108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002494.8E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-231568IPR009057Homeodomain-like
CDDcd001671.03E-91661No hitNo description
PROSITE profilePS5129428.78862116IPR017930Myb domain
SMARTSM007171.7E-1766114IPR001005SANT/Myb domain
PfamPF002496.4E-1767111IPR001005SANT/Myb domain
CDDcd001671.35E-1269112No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2869116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRSPCCERA HTNKGAWTRE EDKRLVAYIQ AHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRKKLLSRG  120
IDPSTHRPIN ESALDNMTTS LGAALKEEIT YGFGCKNQKN PNGEKCQELN LELRICPPYQ  180
HPPQSMESIG RKIMCFYCSL GLKNSKDCSC SNDSDDFLVM KNGTLDYRRQ ENNSKFGLFI  240
VNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043175.10.0PREDICTED: myb-related protein 308-like
SwissprotP813931e-105MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2K2AF671e-170A0A2K2AF67_POPTR; Uncharacterized protein
STRINGPOPTR_0005s11410.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-94myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]