PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032006.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Whirly
Protein Properties Length: 259aa    MW: 28366.5 Da    PI: 9.9813
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032006.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.35e-62832191137
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  sv+k+kaal+v++v+ptf++  sgnl+++r+G+++l++ +a++erkyd+ek+q+falsatev++l++ ++k+sceffhdp++ +sn+G+vrk l+++P
  CCG032006.1  83 SVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTFLPAIGERKYDYEKRQKFALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVRKNLSIKP 180
                  79************************************************************************************************ PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  ++dGsG+fv+lsv n+++k+ e+f+vPv+ aef+vl+++
  CCG032006.1 181 HADGSGYFVSLSVVNNILKTTERFTVPVTTAEFTVLKTA 219
                  ************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.2E-7471235IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.57E-6576257IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.3E-5984218IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MMKLSRFLNS NRNAVGKPTD VRDGSALHAL TFQAGISTGG KSSIQGTEAS IQWFPRSLAS  60
LDTMSCYATK TEKYADRVFA PYSVFKGKAA LSVEPVLPTF SKFGSGNLRV DRRGSMMLTF  120
LPAIGERKYD YEKRQKFALS ATEVGSLIST GPKDSCEFFH DPSMLSSNAG QVRKNLSIKP  180
HADGSGYFVS LSVVNNILKT TERFTVPVTT AEFTVLKTAC SFALPHIMGW DRLTTPLPGT  240
LASKLSKVDP QMPDLEWDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A7e-92732376170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B7e-92732376170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C7e-92732376170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D7e-92732376170Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1460250.0EF146025.1 Populus trichocarpa clone WS0115_A07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011443.11e-163PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotQ8VYF76e-95WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA9PCM91e-160A9PCM9_POPTR; Whirly family protein
STRINGcassava4.1_015441m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-97WHIRLY 2