PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032077.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 207aa    MW: 23893.2 Da    PI: 9.6323
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032077.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.48.1e-32321302102
                   HHHHHHHHHC.......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeile.......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                   Fl+k+y++le        ++ k++ sw+++gn fvv+ + ef++  Lp+yFkhsnf+SF+RQLn+YgFkk+++++         weFkh+ F+kg++
   CCG032077.1  32 FLSKTYDLLEeggahdsAPHGKRIASWNAEGNGFVVWSPAEFSELTLPRYFKHSNFSSFIRQLNTYGFKKTSSKQ---------WEFKHEMFQKGRR 119
                   9*********7777766669999************************************************9988.........************* PP

                   XXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkks 102
                   ++l +i rkk 
   CCG032077.1 120 HMLVEIIRKKC 130
                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-3423123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-4028128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-2629128IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-2832128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MAATFSQLEQ DTTSKSSSSN TRSPRTKCPA PFLSKTYDLL EEGGAHDSAP HGKRIASWNA  60
EGNGFVVWSP AEFSELTLPR YFKHSNFSSF IRQLNTYGFK KTSSKQWEFK HEMFQKGRRH  120
MLVEIIRKKC EPSMFPTYLK ASSNQENATL DMEETTCSML MAENKNLRRE KLELQIQIAQ  180
FKALETKLLD CLTQYMGNHQ NKTRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-16301282104Putative transcription factor
5d5x_B2e-16301282104Putative transcription factor
5d5x_E2e-16301282104Putative transcription factor
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043366.11e-156PREDICTED: heat stress transcription factor B-2a-like
TrEMBLU5FYD01e-130U5FYD0_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05130.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-36heat shock transcription factor B2A