PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032114.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 259aa    MW: 28703.8 Da    PI: 8.9899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032114.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2063112255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  CCG032114.3  63 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 112
                  69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-1463112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3163120IPR001471AP2/ERF domain
SMARTSM003802.5E-3963126IPR001471AP2/ERF domain
CDDcd000187.84E-1963121No hitNo description
PROSITE profilePS5103223.51263120IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2263120IPR016177DNA-binding domain
PRINTSPR003675.6E-116475IPR001471AP2/ERF domain
PRINTSPR003675.6E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MISSIKVEFI LVHALQFHEG DIEMKSTPSQ NSLFSYWNQP HSSSKNHEGG KCGGAGGGGK  60
EVHFRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA RAYDAAAREF RGSKAKTNFA  120
YPSYENVRKN TISVDSNHKA SNKNNSCGGG GSNSNNNQSP SQSSNVEFSS SDTPLDLNLG  180
PAVSTVRLPF QPMVMNHQQV IYFDAVMKSQ YQKTVFDNGY HHHHHHPIVF DLNHQDIKAP  240
RSSVDLDLNL NLPPPPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2263119259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043434.11e-158PREDICTED: ethylene-responsive transcription factor 11-like, partial
TrEMBLA0A2K1YG081e-108A0A2K1YG08_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05580.11e-109(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-24erf domain protein 9