PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032207.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 312aa    MW: 35658.1 Da    PI: 5.0647
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032207.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-092562892255
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yp+++++  LA+++gL+++q+ +WF N+R ++
  CCG032207.1 256 WPYPTEADKIALAESTGLDQKQINNWFINQRKRH 289
                  58*****************************885 PP
2ELK27.19.7e-10209230122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK+ Llr +++++g+Lk EFs
  CCG032207.1 209 ELKDKLLRRFGSHIGTLKLEFS 230
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-2171115IPR005540KNOX1
PfamPF037903.7E-2073114IPR005540KNOX1
SMARTSM012569.5E-25121172IPR005541KNOX2
PfamPF037917.6E-24126171IPR005541KNOX2
SMARTSM011882.0E-5209230IPR005539ELK domain
PROSITE profilePS512139.463209229IPR005539ELK domain
PfamPF037899.2E-8209230IPR005539ELK domain
PROSITE profilePS5007112.503229292IPR001356Homeobox domain
SuperFamilySSF466895.56E-19230303IPR009057Homeodomain-like
SMARTSM003891.6E-12231296IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-27234293IPR009057Homeodomain-like
CDDcd000862.19E-11241293No hitNo description
PfamPF059203.3E-17249288IPR008422Homeobox KN domain
PROSITE patternPS000270267290IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEGTYGLHST VADYSDKALM SPENLILPTE YQSLLSSETF RQRIPIQGSQ ELLSEAASIT  60
TEIQREGDMS SLIKAKIASH PCYPRLLEAY IDCQKVGAPP QSARFLDEIR RENDLFKHEA  120
VSTYWGADPE LDEFMETYCD LLVKYKSDLE RPFDEATTFL NKIEMQFRNI CTAASIRSVS  180
GDGAPSSDEE LSGGEMDMHE AQPSGEDREL KDKLLRRFGS HIGTLKLEFS KKKKKGKLPK  240
EARQTLLGWW DVHYKWPYPT EADKIALAES TGLDQKQINN WFINQRKRHW KPSENLQFAV  300
MNNLSGQFFA ED
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034113.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-144KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLB9HLS50.0B9HLS5_POPTR; Uncharacterized protein
STRINGEOY005441e-166(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-138KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]