PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032210.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

YABBY

Protein Properties

Length: 206aa MW: 23232.1 Da PI: 6.6199

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032210.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	163.3	1.8e-50	12	157	19	168
YABBY 19 ntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp.v 115 + i vsvP +sl++vvtv CGhCtsl+svn++k+s l s + s ++e++e+l+ e ++ k +++++ s + ++++d+++ +v + + CCG032210.1 12 DQICYVSVPCSSLSTVVTVICGHCTSLFSVNMKKFSFLPFNLST-SLSNEDEQKEQLRPEVNAQKGLEMQNSFMAISFN----NDEDDRNINQVNRvI 104 567889*************************99977666654.6667777888888877776666555444433333....356666777776658 PP YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++PPekrqr Psaynrfi+eei+rik++nP i+h+eafs+aaknWah P +h CCG032210.1 105 NKPPEKRQRGPSAYNRFIREEIRRIKTENPRIAHKEAFSTAAKNWAHSPLVHC 157 9************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.8E-51	12	157	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-7	101	151	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	106	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSTLNHLFDL PDQICYVSVP CSSLSTVVTV ICGHCTSLFS VNMKKFSFLP FNLSTSLSNE 60 DEQKEQLRPE VNAQKGLEMQ NSFMAISFNN DEDDRNINQV NRVINKPPEK RQRGPSAYNR 120 FIREEIRRIK TENPRIAHKE AFSTAAKNWA HSPLVHCEYT VGESSGLEEE NGSWSCDAAD 180 QVNVESKGLH GGKVPRHSML AKTPFE

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034119.1	1e-151	PREDICTED: axial regulator YABBY 4-like isoform X1
Swissprot	Q9LDT3	6e-57	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2K1ZJQ3	1e-129	A0A2K1ZJQ3_POPTR; Uncharacterized protein
STRING	POPTR_0008s19330.1	1e-127	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-55	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]