PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032314.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 314aa    MW: 34412.6 Da    PI: 4.1902
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032314.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.71e-07432635
     zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHk 35
                 C+++++  ++ fCe+++  lC dC ++ H+
  CCG032314.1  4 CELCGSS-ARMFCESDEANLCWDCDEKVHS 32
                 *****99.*******************995 PP
2zf-B_box22.32.7e-0786116334
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeH 34 
                  ++ C+++++  ++ +Ce++q  lC dC ++ H
  CCG032314.1  86 MKGCELCGSS-ARMYCESDQASLCWDCHEKVH 116
                  567*****99.*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-9145IPR000315B-box-type zinc finger
PROSITE profilePS501198.987145IPR000315B-box-type zinc finger
PfamPF006433.4E-6432IPR000315B-box-type zinc finger
CDDcd000211.40E-5445No hitNo description
SMARTSM003361.2E-1084130IPR000315B-box-type zinc finger
PROSITE profilePS501199.284130IPR000315B-box-type zinc finger
PfamPF006431.7E-587117IPR000315B-box-type zinc finger
CDDcd000211.54E-489130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MKGCELCGSS ARMFCESDEA NLCWDCDEKV HSANFLVAKH CRTLLCQVCQ SPTPWKASVS  60
KFAPTVSICE SCFTIPNKTE ETEERMKGCE LCGSSARMYC ESDQASLCWD CHEKVHAANF  120
LVAKHCRTLL CQVCQSPTPW KASGSKFAPT VSICESCFSI PKNKRHFPSE NVMTSDQENQ  180
GGGNDLDESE NDQEVDDDDD TDDDSDEDED EKQEDEDGDN QVVPWSGPTA SSPPSPVPPV  240
ASSSSEEETS CAGRNGFLKR MRESNVDLDS DDEIGCSSSH NIGGGRLSNE EGNSLSLLRP  300
WKKARTSVNV EEDG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164490.0AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029384.10.0PREDICTED: B-box zinc finger protein 22
TrEMBLA0A3N7FF710.0A0A3N7FF71_POPTR; Uncharacterized protein
STRINGPOPTR_0011s12810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2067634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-13salt tolerance homolog2