PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032519.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 286aa    MW: 31617.1 Da    PI: 7.6908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032519.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023112134123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  CCG032519.1 112 FSCNYCQRKFYSSQALGGHQNAH 134
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-6108139No hitNo description
PROSITE profilePS5015711.427112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEPPARSEAC LSETSSIISV SNAPLSLKAS VIMKSQKEVK QLEEDHAEEE EERHQEGVDN  60
NYDLVLDLSL SSKDSKQDSS KPQLNLIDSF DMDPSSKSLD APQGNETEPR VFSCNYCQRK  120
FYSSQALGGH QNAHKRERTL SKRGQRISAA SFSLLQPNYS HQNGYTSMAS LPLHGSFNRS  180
LGIQVHSMIH KPFSTSSSSS IYGQNGWSRK PIDQQPAIGR LASDKFQMAT SIKGSSSSNG  240
VARFESTRKF SPVSTEGIGG FWWDGGVNHL KTKQDDLQKL DLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034512.10.0PREDICTED: zinc finger protein 1-like
TrEMBLB9GMC40.0B9GMC4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s14780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.13e-43C2H2 family protein