PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG032624.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 292aa MW: 31469.2 Da PI: 4.5084

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG032624.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.8	4e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv + CCG032624.1 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLREIVSK 69 899**************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	3.0E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.43E-19	1	71	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.0E-18	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL KHCVQSYNVF 60 DFLREIVSKV PDYSHGHSDA AADHRPLQKR KPTVDECNDS DEELKRSRMH ETSHAGSSGR 120 GRGRGRGRGR GRGARNIERE TSSRDLEPES STAVSLSVKN NSNPDVVMDN GSESKESVKE 180 NNIASDAASQ AERNFDLNAE VNDSEDAKAA AAAAATTTTA AAAAATTTTA AAAAAPTTAA 240 PSLSAEPAAE TNHEEYPGWS LSEMDKMAID PLQLAQFSTR DEEEEDYDEE EG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-14	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	131	RGRGRGRGRGR
2	123	132	RGRGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034688.1	0.0	PREDICTED: dr1-associated corepressor homolog
TrEMBL	A0A2I4KK44	1e-150	A0A2I4KK44_POPTR; NF-YC family protein
STRING	POPTR_0001s07050.1	1e-151	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-58	nuclear factor Y, subunit C11