PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032682.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 194aa    MW: 21259.6 Da    PI: 10.0352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032682.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000565173123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k Fs+   L  H  +H
  CCG032682.1 51 FSCKTCNKNFSSFQALGGHRASH 73
                 89**********99999998887 PP
2zf-C2H210.70.001799121123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F+    L  H+r+H
  CCG032682.1  99 HQCSICGLEFPIGQALGGHMRRH 121
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.0E-949121No hitNo description
PfamPF139121.7E-105175IPR007087Zinc finger, C2H2
SMARTSM003550.565173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3885178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PfamPF139121.1E-999123IPR007087Zinc finger, C2H2
SMARTSM003550.1399121IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.30799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSSITMKRGR EEGELDMGKC LMLLYKVGKA DDHELPTNYK SSSPSGAGRL FSCKTCNKNF  60
SSFQALGGHR ASHKKPKLVG STGNLLMKLP NSPQKPKNHQ CSICGLEFPI GQALGGHMRR  120
HRADNIYATS NSTADNELAV TYPPLLPAVP VLKRSNSSKR VLCLDLSLAL PMDQNESELQ  180
LRRASTQSVL KCFI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042666.11e-142PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A2K1Z1T61e-128A0A2K1Z1T6_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03280.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-38C2H2 family protein