PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032718.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 693aa    MW: 76753.7 Da    PI: 9.6486
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032718.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07593642147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      CCG032718.1 593 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 642
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.43E-6401484IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.6E-4402475No hitNo description
PROSITE profilePS500539.221404474IPR000626Ubiquitin domain
PROSITE profilePS5129415.654588647IPR017930Myb domain
SMARTSM007173.5E-7592645IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-10593643IPR009057Homeodomain-like
CDDcd116605.86E-17594644No hitNo description
SuperFamilySSF466891.61E-15594675IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPMP RATRSARRRG SFKKKHEENQ MYAFDLLAIV AGKLLLDKER  60
APSSSDTSAD EDQHAVINSA VKNEWQDQEK SLKVEACDQG SADKNIYVSA LSRVHRQGCS  120
SKGSLVTQND LNLGLTSALT KPDCAERSNA EKFGNGQSKS EIGTFASKVE GGSSEYIEFG  180
GCKLEAETKR AVKDEPHKSG MVQSSTVANI CNLEDPVVLD AKPPALVSSD SSAKVPLCGN  240
HAPDSSYPTI QDDVNVVSRD DDENSSGCTH PITTKKFFRP APRIGDRRIR KILASKYWKV  300
APRLKDATVS NSDRDLKPVF RKRQNCYRHQ RSERIYPFKK RKHFAYSSPS NSGGGMSCEF  360
VSDSSQKGSN EDASVSCSRM RGATRTSSSF AGRHTSFLPR DSHVKLRIKS FSVPELLIEI  420
PESSTVGSLK RTVMDAVTAI LGSGIRVGVL LQGKKVREDN KTLQQTGISR NNQLDALGFC  480
LEPNPSEIPP SLCPGDSPFF LQCDTPQPIL RYPHTTGVVH QSICAVPEPH VNNLGNYIES  540
DHDSAPFPTD TSMDKSTNSK ALVAVPAMNV EALAVVPAHR KSKRSEIAQR RIRRPFSVTE  600
VEALVQAVEK LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ  660
ELLDRVLAAH AYWSQQQAKQ QFKHQQAETC LLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-575776831107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320341RKRQNCYRHQRSERIYPFKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042712.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A2K1Z2170.0A0A2K1Z217_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-164TRF-like 2