PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG032954.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Whirly
Protein Properties Length: 1067aa    MW: 118866 Da    PI: 8.0059
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG032954.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly145.32.4e-45922321139
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskescef..fhdpaakgsneGkvrkalkv 96 
                  s+yk+kaal++++++p+f+ l+sg+ kl ++G++l ++a+a + r+ydW +kq+f+l  te ++lv +   +  ++       ++  +eGkvrk+lkv
  CCG032954.1  92 SIYKGKAALTMEPRAPEFSPLESGAYKLVKEGFVLSQFAPASSARQYDWTRKQEFSLWLTESGHLVGIFIVGDRNWtpCKSWCKRFLEEGKVRKVLKV 189
                  79****************************************************************9544444333003444577789********** PP

       Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                  ePlpdGsG+f+nlsv+n++++ +es+++Pv++ae++vl+s+++
  CCG032954.1 190 EPLPDGSGHFFNLSVQNKVLNIDESIYIPVTRAEYTVLISAFN 232
                  ***************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.5E-5881250IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544479.42E-5785278IPR009044ssDNA-binding transcriptional regulator
PfamPF085367.0E-4093229IPR013742Plant transcription factor
Gene3DG3DSA:3.40.50.7203.5E-68356605IPR016040NAD(P)-binding domain
SuperFamilySSF517351.01E-65360605IPR016040NAD(P)-binding domain
PRINTSPR000813.9E-30362379IPR002347Short-chain dehydrogenase/reductase SDR
PfamPF135611.8E-46370604No hitNo description
PRINTSPR000813.9E-30443454IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000805.0E-6443454IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.9E-30489505IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000805.0E-6495503IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610502530IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000813.9E-30515534IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000805.0E-6515534IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.9E-30536553IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000813.9E-30570590IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:3.40.50.3009.7E-43607796IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004877.6E-31611825IPR014001Helicase superfamily 1/2, ATP-binding domain
PfamPF002703.9E-29616789IPR011545DEAD/DEAH box helicase domain
PROSITE profilePS5119219.582623805IPR014001Helicase superfamily 1/2, ATP-binding domain
SuperFamilySSF525404.21E-41624961IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.2E-26806974IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000792.94E-15824953No hitNo description
PROSITE profilePS5119413.377834999IPR001650Helicase, C-terminal
PfamPF002712.3E-16837954IPR001650Helicase, C-terminal
SMARTSM004901.4E-14871955IPR001650Helicase, C-terminal
ProDomPD2089508.0E-99931049No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1067 aa     Download sequence    Send to blast
MLQLNSVSWL SSTTQNPMLW LPQSNSQSSQ DSRAFNVIIN SKTSNTKKKK KLSVKCQYYD  60
QQQKSFTSSS RPSSSFAPPV GESPPKVFVG HSIYKGKAAL TMEPRAPEFS PLESGAYKLV  120
KEGFVLSQFA PASSARQYDW TRKQEFSLWL TESGHLVGIF IVGDRNWTPC KSWCKRFLEE  180
GKVRKVLKVE PLPDGSGHFF NLSVQNKVLN IDESIYIPVT RAEYTVLISA FNYILPYLLG  240
WHAYANANSI KSADSNRENN VNPIYEGDYD WNRYPTTNAA NHAVLKAIKS FFVPPFCSLT  300
TVELSRGEEI YYFWHKMANG KDQFRFPLQT QPQQPGKEYL MHPLPQAINP KYQPSNKLHG  360
KVALVTGGDS GIGRSVCYHF ALEGATVAFT YVEGIEDRDK DETLQMLLKA KSNVAKEPIA  420
IATDVKFEEN CKKVVDQVVS EFGQIDILVN NAAEQYYVTA IEEITESRLE RIFRTNIFSQ  480
FFMARHSLKY MKEGSCIINT ASANAYTGGS QFLDYSSTKG AIVTFTRGLS QLLISKGIRV  540
NAVSPGPVWT PIQPASLPAE KVASLGSDVP MDRAAQPYEI APSYVFLASN ECSSYFNGQV  600
LHPNGMVEEV GYAVPTDVQK QALPVLFSGR DCILHAQTGS GKTLAYLLLI FSVINTQRSA  660
VQSLIVVPTR ELGIQVTKVA RMLAATPTEN DAEQKSCTVM ALLDGGMLRR HKSWLKAEPP  720
TIVVATIASL CQMLEKHLLK LESMQVLVID EVDFMFSSSK QVSSLRKLLT SYSSCNSRQT  780
VFASASIPQH NRFLYDCIQQ KWTKRDVVHV HVNPIEPMPT CLQHRFVICS KKERHQTLLS  840
LLQSDAPKSG IIFVGEQSEK SKKAGNGPPT VDLVDFLKTS YGGCSEILLL EEDMNFNSRA  900
ASLSEVRQGG GYLLVATDIA ARGVDLPEIT HIYNFDLPRT AVDYLHRAGR TGRKPFSDEK  960
CNVTSIIMPE ERKQLCYFSV SFIDVGTKHR CTSNFRTSLN LKKKNDNAEC LAEEIADPLT  1020
DQPSKDATDS CTVPGTEPQF PGHPILFAQV DSEEVIYQLA VTENSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3i3o_A2e-863156072287Short chain dehydrogenase
3i3o_B2e-863156072287Short chain dehydrogenase
3i3o_C2e-863156072287Short chain dehydrogenase
3i3o_D2e-863156072287Short chain dehydrogenase
3i3o_E2e-863156072287Short chain dehydrogenase
3i3o_F2e-863156072287Short chain dehydrogenase
3i3o_G2e-863156072287Short chain dehydrogenase
3i3o_H2e-863156072287Short chain dehydrogenase
3ijr_A2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
3ijr_B2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
3ijr_C2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
3ijr_D2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
3ijr_E2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
3ijr_F2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
3ijr_G2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
3ijr_H2e-863156072287Oxidoreductase, short chain dehydrogenase/reductase family
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1464074e-76EF146407.1 Populus trichocarpa clone WS0117_P12 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.23e-80ssDNA-binding transcriptional regulator