PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033024.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 421aa    MW: 46900.8 Da    PI: 8.098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033024.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-065880123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C++C++ F r  nL+ H r+H
  CCG033024.1 58 YVCEICSQGFQRDQNLQMHRRRH 80
                 9*********************9 PP
2zf-C2H216.23.1e-05135157123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C+k +  +s++k H++t+
  CCG033024.1 135 WVCEKCSKGYAVQSDYKAHLKTC 157
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.17E-55581No hitNo description
Gene3DG3DSA:3.30.160.605.9E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9075880IPR007087Zinc finger, C2H2
SMARTSM003550.0115880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SMARTSM0035517099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-4126156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560135162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MLDSITTSTA PSPSPDPFTS SLDNGLANKR KRKPAGTPDP DAEVVSLSPR TLLESDRYVC  60
EICSQGFQRD QNLQMHRRRH KVPWKLLKRE TQEVKKRVYV CPEPSCLHHD PCHALGDLVG  120
IKKHFRRKHS NHKQWVCEKC SKGYAVQSDY KAHLKTCGTR GHSCDCGRVF SRVESFIEHQ  180
DACTVRRAQP ELQALQPACS SRTASSTSPS SDANFSIVPL PGIPMSKATE PVYLYSDRND  240
ASTSQQEHNL ELQLLPASSP HLPQNPDEGY ATNLKLSIGS SDSSKKNEQF KAIMDPGDPK  300
RTYEPTLEAA KLEEFANEQL RLAVTEKAYA EEARHHAKRQ IEMAELEFAN AKRIRQQAQA  360
ELEKAQVLRE QATKKISSTI MQVTCQACKL QFKLSTAAAS ADETSLAMSY MSSATTEGDG  420
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-18133183555Zinc finger protein JACKDAW
5b3h_F5e-18133183555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470670.0EF147067.1 Populus trichocarpa clone WS01227_A11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021714.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotF4IPE31e-165IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA9PFF00.0A9PFF0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s11160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-156indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]