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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
CCG033025.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 338aa MW: 37499 Da PI: 9.7923 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| CCG033025.1 | genome | LZU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 330.1 | 6e-101 | 60 | 338 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllall 85
mddd+ + rn+gyyep+ ke lglqlm + +rd+k r+ n + + +a+ +rd m++ +rd++++ +k+l++l
CCG033025.1 60 MDDDALNMRNWGYYEPS--YKEPLGLQLMPAMVDRDSKHllprRDPNNIMVGATGAYLPRDslvsdasmhMNY-MRDSWINR---------EKFLNML 145
9***9999*******99..999****************99**9999999*******************99999.9*****99.........89***** PP
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
+ + s + v ++t+ ++s+ + l+++ ++ + +e++ +++ + ++ +k+++ ++ pk++k+kk++k + +v++++
CCG033025.1 146 PPNPS--------YVVHPETSGAQSMPM-----LQPPDSSrDERVSRIEEPSVSK-EGSSLKKRQVG----GTAPKTPKSKKPRKPK-----DVSNNT 220
95554........77899********99.....4444444123344455555554.33333333333....4556666666655522.....233333 PP
GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydls 280
+ +r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s+krrgaRiagrKmSqgafkk+LekLaaeGy+++
CCG033025.1 221 V-QRAKPAKKSVDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSMYPLPMSSKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFA 317
2.57899******************************************************************************************* PP
GAGA_bind 281 npvDLkdhWAkHGtnkfvtir 301
np+DL+ hWA+HGtnkfvtir
CCG033025.1 318 NPIDLRAHWARHGTNKFVTIR 338
********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MINEKHRHCV LYLSVVKVIA FITRGLFDSL DDQGDNAAGD GSRNISEADI GIAMLLVASM 60
DDDALNMRNW GYYEPSYKEP LGLQLMPAMV DRDSKHLLPR RDPNNIMVGA TGAYLPRDSL 120
VSDASMHMNY MRDSWINREK FLNMLPPNPS YVVHPETSGA QSMPMLQPPD SSRDERVSRI 180
EEPSVSKEGS SLKKRQVGGT APKTPKSKKP RKPKDVSNNT VQRAKPAKKS VDVVINGIDM 240
DISGIPIPVC SCTGTPQQCY RWGCGGWQSA CCTTNVSMYP LPMSSKRRGA RIAGRKMSQG 300
AFKKVLEKLA AEGYNFANPI DLRAHWARHG TNKFVTIR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU130561 | 0.0 | EU130561.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC2) mRNA, complete cds. |
